Evidence map›Paper›PMID 10536011›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Adeno-associated virus (AAV) site-specific integration: formation of AAV-AAVS1 junctions in an in vitro system.

J Dyall, P Szabo, K I Berns

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Ribosomal DNA integrating rAAV-rDNA vectors allow for stable transgene expression.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Article
  7. Article
  8. Article
  9. Gene therapy for cystic fibrosis.Clinical reviews in allergy & immunology · 2008
    Review
  10. Article
  11. DNA-dependent PK inhibits adeno-associated virus DNA integration.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  12. Article
  13. Article
  14. A p5 integration efficiency element mediates Rep-dependent integration into AAVS1 at chromosome 19.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

J DyallDepartment of Human Genetics, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.
P Szabo
K I Berns
Florida College · USMemorial Sloan Kettering Cancer Center · US

Funding

REGULATION OF AAV DNA REPLICATIONR01GM050032 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BERNS, KENNETH IRA · 1993 to 2000
$232k
MOLECULAR BIOLOGY OF ADENO-ASSOCIATED VIRUSR01AI022251 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BERNS, KENNETH IRA · 1985 to 1988
–
MOLECULAR BIOLOGY OF ADENO-ASSOCIATED VIRUSR37AI022251 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BERNS, KENNETH IRA · 1989 to 1998
–
NIAID NIH HHS AI 22251NIGMS NIH HHS GM 50032
6 · The paper itself

Abstract

An in vitro system to study the mechanism of site-specific integration of adeno-associated virus (AAV) was developed. This system is based on two substrates, a linear or circular AAV donor and a circular acceptor containing the preintegration locus AAVS1. In the presence of HeLa extract and the His-Tag-purified Rep68 protein, specific covalent junctions between AAV and AAVS1 were formed and detected by PCR. The majority of the junctions were located within the Rep binding site of both the AAV and the AAVS1 substrates, underlining the involvement of the Rep protein. A limited amount of replication and the presence of nuclear factors promoted the efficiency of the reaction. The process was ATP-dependent, indicating that the helicase activity of Rep may be important in the formation of the junctions. According to current models of integration, the formation of the junctions would represent a first step in the process of AAV integration. This step could be crucial for the site specificity of the recombination event that leads to the integration of AAV into human chromosome 19 in vivo.

Indexed as

Virus IntegrationBase SequenceCloning, MolecularDependovirusDNA PrimersGenes, ViralHeLa CellsHumansPolymerase Chain ReactionRecombination, GeneticDNA Primers

Identifiers

PMID10536011
PMCPMC23128
OpenAlexW2106149063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.