Evidence map›Paper›PMID 10523654›Full record

ArticleMolecular and cellular biology1999

Control of meiotic recombination and gene expression in yeast by a simple repetitive DNA sequence that excludes nucleosomes.

D T Kirkpatrick, Y H Wang, M Dominska, J D Griffith, T D Petes

Abstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
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  5. Article
  6. Article
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  8. Article
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  10. Article
  11. Mutational dynamics of microsatellites.Molecular biotechnology · 2010
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Discovery of a new HBB haplotype w2 in a wild-derived house mouse, Mus musculus.Mammalian genome : official journal of the International Mammalian Genome Society · 2008
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

D T KirkpatrickDepartment of Biology University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA.
Y H Wang
M Dominska
J D Griffith
T D Petes

Funding

RECOMBINATION IN YEASTR01GM024110 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1985 to 2015
$6.1M
HOMOLOOUS RECOMBINATION: ITS MOLECULAR CYTOLOGYR01GM031819 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRIFFITH, JACK D · 1985 to 2017
$5.2M
NIGMS NIH HHS GM24110NIGMS NIH HHS GM31819NIGMS NIH HHS R01 GM024110NIGMS NIH HHS R01 GM031819
6 · The paper itself

Abstract

Tandem repeats of the pentanucleotide 5'-CCGNN (where N indicates any base) were previously shown to exclude nucleosomes in vitro (Y. -H. Wang and J. D. Griffith, Proc. Natl. Acad. Sci. USA 93:8863-8867, 1996). To determine the in vivo effects of these sequences, we replaced the upstream regulatory sequences of the HIS4 gene of Saccharomyces cerevisiae with either 12 or 48 tandem copies of CCGNN. Both tracts activated HIS4 transcription. We found that (CCGNN)(12) tracts elevated meiotic recombination (hot spot activity), whereas the (CCGNN)(48) tract repressed recombination (cold spot activity). In addition, a "pure" tract of (CCGAT)(12) activated both transcription and meiotic recombination. We suggest that the cold spot activity of the (CCGNN)(48) tract is related to the phenomenon of the suppressive interactions of adjacent hot spots previously described in yeast (Q.-Q. Fan, F. Xu, and T. D. Petes, Mol. Cell. Biol. 15:1679-1688, 1995; Q.-Q. Fan, F. Xu, M. A. White, and T. D. Petes, Genetics 145:661-670, 1997; T.-C. Wu and M. Lichten, Genetics 140:55-66, 1995; L. Xu and N. Kleckner, EMBO J. 16:5115-5128, 1995).

Indexed as

Recombination, GeneticSaccharomyces cerevisiae ProteinsTandem Repeat SequencesTranscriptional ActivationAlcohol OxidoreductasesAminohydrolasesBase SequenceCrosses, GeneticFungal ProteinsGene ConversionGene Expression Regulation, FungalMeiosisModels, GeneticMolecular Sequence DataMutagenesis, InsertionalNucleosomesAlcohol OxidoreductasesAminohydrolasesFungal ProteinsHIS4 protein, S cerevisiaeNucleosomesPyrophosphatasesSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID10523654
PMCPMC84802

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.