ArticleGenome research1999
Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning.
Article in Genome research, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
29 citing papers in PubMed.
- Insertion Hot Spots ofInternational journal of molecular sciences · 2019Article
- Evolution of the myosin heavy chain gene MYH14 and its intronic microRNA miR-499: muscle-specific miR-499 expression persists in the absence of the ancestral host gene.BMC evolutionary biology · 2013Article
- Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon.BMC genomics · 2011Article
- Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness.BMC genomics · 2010Article
- Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.BMC bioinformatics · 2008Article
- A genome-wide microsatellite polymorphism database for the indica and japonica rice.DNA research : an international journal for rapid publication of reports on genes and genomes · 2007Article
- Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates.Proceedings of the National Academy of Sciences of the United States of America · 2004Article
- Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.Genome research · 2004Article
- Article
- Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence.Nucleic acids research · 2003Article
- Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice.Nucleic acids research · 2003Article
- Genome size evolution in pufferfish: a comparative analysis of diodontid and tetraodontid pufferfish genomes.Genome research · 2003Article
- Genome duplication, a trait shared by 22000 species of ray-finned fish.Genome research · 2003Article
- Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome.Immunogenetics · 2003Article
- Evolution of signal transduction by gene and genome duplication in fish.Journal of structural and functional genomics · 2003Review
- Sushi gets serious: the draft genome sequence of the pufferfish Fugu rubripes.Genome biology · 2002Review
- Comparative analysis of somitogenesis related genes of the hairy/Enhancer of split class in Fugu and zebrafish.BMC genomics · 2002Article
- Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish.Genetics · 2002Article
- Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q.Genome research · 2002Article
Corrections and comments
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Authors and funding
12 authors.
Funding
Abstract
We have generated and analyzed >50,000 shotgun clones from 1059 Fugu cosmid clones. All sequences have been minimally edited and searched against protein and DNA databases. These data are all displayed on a searchable, publicly available web site at. With an average of 50 reads per cosmid, this is virtually nonredundant sequence skimming, covering 30%-50% of each clone. This essentially random data set covers nearly 25 Mb (>6%) of the Fugu genome and forms the basis of a series of whole genome analyses which address questions regarding gene density and distribution in the Fugu genome and the similarity between Fugu and mammalian genes. The Fugu genome, with eight times less DNA but a similar gene repertoire, is ideally suited to this type of study because most cosmids contain more than one identifiable gene. General features of the genome are also discussed. We have made some estimation of the syntenic relationship between mammals and Fugu and looked at the efficacy of ORF prediction from short, unedited Fugu genomic sequences. Comparative DNA sequence analyses are an essential tool in the functional interpretation of complex vertebrate genomes. This project highlights the utility of using the Fugu genome in this kind of study.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.