Evidence map›Paper›PMID 10511558›Full record

ArticleGenetics1999

Enhancer blocking by the Drosophila gypsy insulator depends upon insulator anatomy and enhancer strength.

K C Scott, A D Taubman, P K Geyer

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 128 citations in OpenAlex.

  1. Article
  2. Review
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  8. Article
  9. Mining theFrontiers in plant science · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.International journal of molecular sciences · 2021
    Review
  15. The insulator functions of theScience advances · 2020
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

K C ScottDepartment of Biochemistry, University of Iowa, College of Medicine, Iowa City, Iowa 52242, USA.
A D Taubman
P K Geyer
University of Iowa · US

Funding

REGULATION OF TISSUE-SPECIFIC GENE EXPRESSIONR01GM042539 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K. · 1991 to 2017
$4.9M
NIGMS NIH HHS GM42539
6 · The paper itself

Abstract

Insulators are specialized DNA sequences that prevent enhancer-activated transcription only when interposed between an enhancer and its target promoter. The Drosophila gypsy retrotransposon contains an insulator composed of 12 degenerate binding sites for the Suppressor of Hairy-wing [Su(Hw)] protein that are separated by AT-rich DNA possessing sequence motifs common to matrix/scaffold attachment regions (MARs/SARs). To further understand mechanisms of insulator function, the parameters required for the gypsy insulator to prevent enhancer-activated transcription were examined. Synthetic binding regions were created by reiteration of a single Su(Hw) binding site that lacked the MAR/SAR motifs. These synthetic binding regions reconstituted insulator activity, suggesting that the property of enhancer blocking may be distinct from matrix association. We found that the number and spacing of Su(Hw) binding sites within the gypsy insulator, as well as the strength of the enhancer to be blocked, were important determinants of insulator function. These results provide a link between transcription and insulation, suggesting that these processes may be mechanistically interconnected.

Indexed as

Drosophila ProteinsEnhancer Elements, GeneticRetroelementsVitellogeninsBase Sequencebeta-GalactosidaseBinding SitesDNA-Binding ProteinsEgg ProteinsInsect ProteinsMolecular Sequence DataNuclear ProteinsRecombinant Fusion ProteinsRepressor Proteinsbeta-GalactosidaseDNA-Binding ProteinsDrosophila ProteinsEgg ProteinsInsect ProteinsNuclear ProteinsRecombinant Fusion ProteinsRepressor ProteinsRetroelementssu(Hw) protein, DrosophilaVitellogeninsyolk protein 2, Drosophila

Identifiers

PMID10511558
PMCPMC1460797
OpenAlexW2126461115

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.