Evidence map›Paper›PMID 10500215›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS).

J E Graham, J E Clark-Curtiss

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 194 papers.

0numbers the graph read from it
0cells of the map it votes in
194citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

194 citing papers in PubMed, 449 citations in OpenAlex.

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  13. Review
  14. Dual RNA Sequencing ofInternational journal of molecular sciences · 2022
    Article
  15. Review
  16. Review
  17. Regulation of theJournal of bacteriology · 2021
    Article
  18. Article
  19. Review
  20. The Journal of biological chemistry · 2020
    Article

134 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J E GrahamDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
J E Clark-Curtiss
Washington University in St. Louis · US

Funding

TUBERCULOSIS RESEARCH UNITN01AI045244 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BOAM, HENRY · 1994 to 1999
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VIRULENCE DETERMINANTS OF MYCOBACTERIUM TUBERCULOSISR01AI035267 · NIAID · WASHINGTON UNIVERSITY · PI CLARK-CURTISS, JOSEPHINE E · 1993 to 1995
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MYCOBACTERIUM AVIUM MECHANISMS OF PATHOGENESISR01AI038672 · NIAID · WASHINGTON UNIVERSITY · PI CLARK-CURTISS, JOSEPHINE E · 1995 to 1999
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NIAID NIH HHS AI35267NIAID NIH HHS AI38672NIAID NIH HHS N01 AI045244
6 · The paper itself

Abstract

A widely applicable, positive cDNA selection method was developed to identify RNAs synthesized by Mycobacterium tuberculosis in response to phagocytosis by cultured human primary macrophages. cDNAs for sigE and sigH (alternative sigma factors), aceA (isocitrate lyase), ponA (class I penicillin-binding protein), pks2 (polyketide synthase), uvrA (UvrABC endonuclease), and ctpV (putative cation transporter) were obtained from macrophage-grown bacteria. cDNAs for ORFs Rv3070, Rv3483c, Rv0903c (encoding a putative bacterial two-component transcriptional activator), and Rv0170 of the mce1 virulence operon also were obtained from phagocytized bacilli. cDNAs for these genomic regions were not obtained from approximately 1, 000-fold more bacteria grown in laboratory broth. Methods described here, which have identified M. tuberculosis genes expressed in response to host interaction, will allow the study of gene expression in a variety of microorganisms, including expression resulting from interaction with human tissues in natural disease states.

Indexed as

PhagocytosisTrans-ActivatorsBacterial ProteinsCells, CulturedDNA, ComplementaryHumansMacrophagesMycobacterium tuberculosisRNA, BacterialRNA, MessengerSigma FactorBacterial ProteinsDNA, ComplementaryREGA protein, Rhodobacter sphaeroidesRNA, BacterialRNA, MessengersigE protein, BacteriaSigma FactorTrans-Activators

Identifiers

PMID10500215
PMCPMC18072
OpenAlexW2008994306

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.