Evidence map›Paper›PMID 10496884›Full record

ArticleInfection and immunity1999

Genomic subtractive hybridization and selective capture of transcribed sequences identify a novel Salmonella typhimurium fimbrial operon and putative transcriptional regulator that are absent from the Salmonella typhi genome.

B J Morrow, J E Graham, R Curtiss

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  4. Molecular Characterization ofInternational journal of bacteriology · 2017
    Article
  5. Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells.Frontiers in cellular and infection microbiology · 2014
    Review
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  9. Review
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  14. Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

B J MorrowDepartment of Biology, Washington University, St. Louis, Missouri 63130, USA.
J E Graham
R Curtiss
Washington University in St. Louis · US

Funding

MOLECULAR GENETIC ANALYSIS OF SALMONELLA PATHOGENICITYR01AI024533 · NIAID · WASHINGTON UNIVERSITY · PI CURTISS, ROY · 1987 to 2006
$2.0M
GENETIC BASIS FOR HOST SPECIFICITY IN SALMONELLAF32AI009465 · NIAID · WASHINGTON UNIVERSITY · PI MORROW, BRIAN J · 1996 to 1998
–
VIRULENCE DETERMINANTS OF MYCOBACTERIUM TUBERCULOSISR01AI035267 · NIAID · WASHINGTON UNIVERSITY · PI CLARK-CURTISS, JOSEPHINE E · 1993 to 1995
–
NIAID NIH HHS AI09465NIAID NIH HHS AI24533-10NIAID NIH HHS AI35267NIAID NIH HHS F32 AI009465NIAID NIH HHS R01 AI024533
6 · The paper itself

Abstract

Salmonella typhi, the etiologic agent of typhoid fever, is adapted to the human host and unable to infect nonprimate species. The genetic basis for host specificity in S. typhi is unknown. The avirulence of S. typhi in animal hosts may result from a lack of genes present in the broad-host-range pathogen Salmonella typhimurium. Genomic subtractive hybridization was successfully employed to isolate S. typhimurium genomic sequences which are absent from the S. typhi genome. These genomic subtracted sequences mapped to 17 regions distributed throughout the S. typhimurium chromosome. A positive cDNA selection method was then used to identify subtracted sequences which were transcribed by S. typhimurium following macrophage phagocytosis. A novel putative transcriptional regulator of the LysR family was identified as transcribed by intramacrophage S. typhimurium. This putative transcriptional regulator was absent from the genomes of the human-adapted serovars S. typhi and Salmonella paratyphi A. Mutations within this gene did not alter the level of S. typhimurium survival within macrophages or virulence within mice. A subtracted genomic fragment derived from the ferrichrome operon also hybridized to the intramacrophage cDNA. Nucleotide sequence analysis of S. typhimurium and S. typhi chromosomal sequences flanking the ferrichrome operon identified a novel S. typhimurium fimbrial operon with a high level of similarity to sequences encoding Proteus mirabilis mannose-resistant fimbriae. The novel fimbrial operon was absent from the S. typhi genome. The absence of specific genes may have allowed S. typhi to evolve as a highly invasive, systemic human pathogen.

Indexed as

Genes, RegulatorGenome, BacterialOperonAmino Acid SequenceAnimalsFemaleFimbriae, BacterialMiceMice, Inbred BALB CMolecular Sequence DataNucleic Acid HybridizationSalmonella typhiSalmonella typhimuriumTranscription, GeneticVirulence

Identifiers

PMID10496884
PMCPMC96859
OpenAlexW1872009418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.