Evidence map›Paper›PMID 10490845›Full record

ArticleOncogene1999

Comparative structure and characterization of a CDKN2 gene in a Xiphophorus fish melanoma model.

S Kazianis, D C Morizot, L D Coletta, D A Johnston, B Woolcock, J R Vielkind, R S Nairn

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Oncogene, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Review
  3. Oncogenic allelic interaction inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genetic and environmental melanoma models in fish.Pigment cell & melanoma research · 2010
    Review
  11. Etiology of MNU-induced melanomas in Xiphophorus hybrids.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2009
    Article
  12. Review
  13. Article
  14. Absence of p16INK4a and truncation of ARF tumor suppressors in chickens.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

S KazianisDepartment of Carcinogenesis, Science Park-Research Division, MD Anderson Cancer Center, University of Texas, Smithville, Texas, TX 78957-0389, USA.
D C Morizot
L D Coletta
D A Johnston
B Woolcock
J R Vielkind
R S Nairn
The University of Texas MD Anderson Cancer Center · US

Funding

RESEARCH TRAINING IN CARCINOGENESIS &MUTAGENESIST32CA009480 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RICHIE, ELLEN R · 1985 to 2012
$3.0M
UV CARCINOGENESIS IN NONMAMMALIAN ANIMAL MODELSR01CA055245 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAIRN, RODNEY S · 1991 to 2007
$1.6M
EXAMINATION OF THE CDKN 2X GENE IN XIPHOPHORUS MELANOMASF32CA076693 · NCI · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI KAZIANIS, STEVEN · 1998 to 1999
–
NCI NIH HHS CA09480NCI NIH HHS CA55245NCI NIH HHS CA76693
6 · The paper itself

Abstract

We have cloned, sequenced, and characterized the RNA expression properties of a fish CDKN2 gene from Xiphophorus helleri and X. maculatus. This gene, termed CDKN2X, shows a high degree of amino acid sequence similarity to members of the mammalian CDKN2 gene family, which includes the tumor suppressor loci CDKN2A (P16) and CDKN2B (P15). Comparative sequence analysis suggests that fish CDKN2X is similarly related to all four mammalian gene family members, and may represent a descendant of an ancestral prototypic CDKN2 gene. CDKN2X was mapped to a region on autosomal Xiphophorus linkage group V (LG V) known to contain the DIFF gene that acts as a tumor suppressor of melanoma formation in X. helleri/X. maculatus backcross hybrids. Thus, CDKN2X may be a candidate for the tumor suppressor DIFF gene. Here we have sequenced CDKN2X in both Xiphophorus species and have characterized its expression in normal and melanotic tissues within control and backcross hybrid fish. A simultaneous expressional analysis of the Xmrk-2 tyrosine kinase receptor gene, which is strongly implicated in melanomagenesis in this system, was also performed. RT - PCR analyses revealed that both genes were highly expressed in melanomas. For CDKN2X, this result contrasts numerous findings in human tumors including human melanoma in which either CDKN2A (P16) deactivation or LOH was observed.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCloning, MolecularCyclin-Dependent Kinase Inhibitor p16CyprinodontiformesDisease Models, AnimalDNAFemaleHumansMelanoma, ExperimentalMolecular Sequence DataPhylogenyReverse Transcriptase Polymerase Chain ReactionRNASequence Homology, Amino AcidCyclin-Dependent Kinase Inhibitor p16DNARNA

Identifiers

PMID10490845
OpenAlexW2335383331

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.