Evidence map›Paper›PMID 10490592›Full record

ArticleMolecular and cellular biology1999

AnCF, the CCAAT binding complex of Aspergillus nidulans, is essential for the formation of a DNase I-hypersensitive site in the 5' region of the amdS gene.

F M Narendja, M A Davis, M J Hynes

Abstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Carbon Catabolite Repression in Filamentous Fungi.International journal of molecular sciences · 2017
    Review
  5. Review
  6. Review
  7. Bioprospecting thermophiles for cellulase production: a review.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2012
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

F M NarendjaDepartment of Genetics, University of Melbourne, Parkville, Victoria 3052, Australia.
M A Davis
M J Hynes

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CCAAT sequence in the amdS promoter of Aspergillus nidulans is recognized by AnCF, a complex consisting of the three evolutionary conserved subunits HapB, HapC, and HapE. In this study we have investigated the effect of AnCF on the chromatin structure of the amdS gene. The AnCF complex and the CCAAT sequence were found to be necessary for the formation of a nucleosome-free, DNase I-hypersensitive region in the 5' region of the amdS gene. Deletion of the hapE gene results in loss of the DNase I-hypersensitive site, and the positioning of nucleosomes over the transcriptional start point is lost. Likewise, a point mutation in the CCAAT motif, as well as a 530-bp deletion which removes the CCAAT box, results in the loss of the DNase I-hypersensitive region. The DNase I-hypersensitive region and the nucleosome positioning can be restored by insertion of a 35-bp oligonucleotide carrying the CCAAT motif. A DNase I-hypersensitive region has been found in the CCAAT-containing fmdS gene and was also hapE dependent. These data indicate a critical role for the AnCF complex in establishing an open chromatin structure in A. nidulans.

Indexed as

Promoter Regions, GeneticAmidohydrolasesAspergillus nidulansCCAAT-Enhancer-Binding ProteinsChromatinDeoxyribonuclease IDNA-Binding ProteinsDNA, FungalFungal ProteinsGenes, FungalNucleosomesRepressor ProteinsTATA BoxacetamidaseAmidohydrolasesCCAAT-Enhancer-Binding ProteinsChromatinCreA protein, Aspergillus nidulansDeoxyribonuclease IDNA-Binding ProteinsDNA, FungalFungal ProteinsNucleosomesRepressor Proteins

Identifiers

PMID10490592
PMCPMC84622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.