Evidence map›Paper›PMID 10485919›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Identification of a pathogenicity island, which contains genes for virulence and avirulence, on a large native plasmid in the bean pathogen Pseudomonas syringae pathovar phaseolicola.

R W Jackson, E Athanassopoulos, G Tsiamis, J W Mansfield, A Sesma, D L Arnold, M J Gibbon, J Murillo, J D Taylor, A Vivian

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
31.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 313 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. ThePlant communications · 2021
    Article
  10. A Large Tn7-like Transposon Confers Hyper-Resistance to Copper inApplied and environmental microbiology · 2021
    Article
  11. Review
  12. Review
  13. Plant communications · 2020
    Article
  14. Article
  15. GenesFrontiers in plant science · 2020
    Article
  16. Article
  17. The Role of Proteases in the Virulence of Plant Pathogenic Bacteria.International journal of molecular sciences · 2019
    Review
  18. Frontiers in plant science · 2019
    Review
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

R W JacksonDepartment of Biological and Biomedical Sciences, University of the West of England, Coldharbor Lane, Bristol BS16 1QY, United Kingdom.
E Athanassopoulos
G Tsiamis
J W Mansfield
A Sesma
D L Arnold
M J Gibbon
J Murillo
J D Taylor
A Vivian
University of the West of England · GBUniversidad Publica de Navarra · ESWye College · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 154-kb plasmid was cured from race 7 strain 1449B of the phytopathogen Pseudomonas syringae pv. phaseolicola (Pph). Cured strains lost virulence toward bean, causing the hypersensitive reaction in previously susceptible cultivars. Restoration of virulence was achieved by complementation with cosmid clones spanning a 30-kb region of the plasmid that contained previously identified avirulence (avr) genes avrD, avrPphC, and avrPphF. Single transposon insertions at multiple sites (including one located in avrPphF) abolished restoration of virulence by genomic clones. Sequencing 11 kb of the complementing region identified three potential virulence (vir) genes that were predicted to encode hydrophilic proteins and shared the hrp-box promoter motif indicating regulation by HrpL. One gene achieved partial restoration of virulence when cloned on its own and therefore was designated virPphA as the first (A) gene from Pph to be identified for virulence function. In soybean, virPphA acted as an avr gene controlling expression of a rapid cultivar-specific hypersensitive reaction. Sequencing also revealed the presence of homologs of the insertion sequence IS100 from Yersinia and transposase Tn501 from P. aeruginosa. The proximity of several avr and vir genes together with mobile elements, as well as G+C content significantly lower than that expected for P. syringae, indicates that we have located a plasmid-borne pathogenicity island equivalent to those found in mammalian pathogens.

Indexed as

Plants, MedicinalBacterial ProteinsChromosome MappingFabaceaeModels, BiologicalModels, GeneticMolecular Sequence DataMutagenesisPhenotypePlasmidsPromoter Regions, GeneticPseudomonasReplication OriginTime FactorsTransposasesVirulenceBacterial ProteinsTransposases

Identifiers

PMID10485919
PMCPMC17976
OpenAlexW2029547725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.