Evidence map›Paper›PMID 10477551›Full record

ArticleThe Journal of experimental medicine1999

A novel element upstream of the Vgamma2 gene in the murine T cell receptor gamma locus cooperates with the 3' enhancer to act as a locus control region.

J E Baker, J Kang, N Xiong, T Chen, D Cado, D H Raulet

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The genomic arrangement of T cell receptor variable genes is a determinant of the developmental rearrangement pattern.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J E BakerDepartment of Molecular and Cell Biology and Cancer Research Laboratory, University of California at Berkeley, Berkeley, California 94720, USA.
J Kang
N Xiong
T Chen
D Cado
D H Raulet
University of California, Berkeley · US

Funding

REGULATION OF MHC-DEPENDENCE OF GAMMA DELTA T CELLSR01AI031650 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI RAULET, DAVID H · 1991 to 2010
$4.0M
NIAID NIH HHS R01 AI031650NIAID NIH HHS R01-AI31650
6 · The paper itself

Abstract

Transgenic expression constructs were employed to identify a cis-acting transcription element in the T cell receptor (TCR)-gamma locus, called HsA, between the Vgamma5 and Vgamma2 genes. In constructs lacking the previously defined enhancer (3'E(Cgamma1)), HsA supports transcription in mature but not immature T cells in a largely position-independent fashion. 3'E(Cgamma1), without HsA, supports transcription in immature and mature T cells but is subject to severe position effects. Together, the two elements support expression in immature and mature T cells in a copy number-dependent, position-independent fashion. Furthermore, HsA was necessary for consistent rearrangement of transgenic recombination substrates. These data suggest that HsA provides chromatin-opening activity and, together with 3'E(Cgamma1), constitutes a T cell-specific locus control region for the TCR-gamma locus.

Indexed as

Enhancer Elements, GeneticLocus Control RegionAnimalsBase SequenceCell DifferentiationDNAGene ExpressionGene Rearrangement, gamma-Chain T-Cell Antigen ReceptorMiceMice, Inbred BALB CMice, TransgenicMolecular Sequence DataReceptors, Antigen, T-Cell, gamma-deltaRecombination, GeneticRNAT-LymphocytesDNAReceptors, Antigen, T-Cell, gamma-deltaRNA

Identifiers

PMID10477551
PMCPMC2195622
OpenAlexW2028826679

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.