Evidence map›Paper›PMID 10468556›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Lamivudine (3TC) resistance in HIV-1 reverse transcriptase involves steric hindrance with beta-branched amino acids.

S G Sarafianos, K Das, A D Clark, J Ding, P L Boyer, S H Hughes, E Arnold

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 303 citations in OpenAlex.

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  10. Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  17. Synthetic strategies toward 1,3-oxathiolane nucleoside analogues.Beilstein journal of organic chemistry · 2021
    Review
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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

S G SarafianosCenter for Advanced Biotechnology and Medicine (CABM) and Rutgers University Chemistry Department, 679 Hoes Lane, Piscataway, NJ 08854-5638, USA.
K Das
A D Clark
J Ding
P L Boyer
S H Hughes
E Arnold
BioScience Laboratories (United States) · USNational Cancer Institute · USRutgers, The State University of New Jersey · US

Funding

HIV REVERSE TRANSCRIPTASE WITH RNA/DNA DUPLEXESF32AI009578 · NIAID · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI SARAFIANOS, STEFANOS · 1996 to 1998
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DRUG-RESISTANT HIV REVERSE TRANSCRIPTASE STRUCTURER01AI036144 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ARNOLD, EDWARD V · 1994 to 1998
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NIAID NIH HHS AI 09578NIAID NIH HHS AI 36144NIAID NIH HHS F32 AI009578
6 · The paper itself

Abstract

An important component of triple-drug anti-AIDS therapy is 2', 3'-dideoxy-3'-thiacytidine (3TC, lamivudine). Single mutations at residue 184 of the reverse transcriptase (RT) in HIV cause high-level resistance to 3TC and contribute to the failure of anti-AIDS combination therapy. We have determined crystal structures of the 3TC-resistant mutant HIV-1 RT (M184I) in both the presence and absence of a DNA/DNA template-primer. In the absence of a DNA substrate, the wild-type and mutant structures are very similar. However, comparison of crystal structures of M184I mutant and wild-type HIV-1 RT with and without DNA reveals repositioning of the template-primer in the M184I/DNA binary complex and other smaller changes in residues in the dNTP-binding site. On the basis of these structural results, we developed a model that explains the ability of the 3TC-resistant mutant M184I to incorporate dNTPs but not the nucleotide analog 3TCTP. In this model, steric hindrance is expected for NRTIs with beta- or L- ring configurations, as with the enantiomer of 3TC that is used in therapy. Steric conflict between the oxathiolane ring of 3TCTP and the side chain of beta-branched amino acids (Val, Ile, Thr) at position 184 perturbs inhibitor binding, leading to a reduction in incorporation of the analog. The model can also explain the 3TC resistance of analogous hepatitis B polymerase mutants. Repositioning of the template-primer as observed in the binary complex (M184I/DNA) may also occur in the catalytic ternary complex (M184I/DNA/3TCTP) and contribute to 3TC resistance by interfering with the formation of a catalytically competent closed complex.

Indexed as

Point MutationAllosteric RegulationAmino Acid SequenceAmino Acid SubstitutionConserved SequenceDimerizationDrug Resistance, MicrobialHIV-1HIV Reverse TranscriptaseHumansLamivudineMacromolecular SubstancesModels, MolecularMolecular Sequence DataNucleic Acid ConformationProtein ConformationHIV Reverse TranscriptaseLamivudineMacromolecular SubstancesRNA, Viral

Identifiers

PMID10468556
PMCPMC17836
OpenAlexW2119855246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.