Evidence map›Paper›PMID 10445882›Full record

ArticleRNA (New York, N.Y.)1999

Pac1p, an RNase III homolog, is required for formation of the 3' end of U2 snRNA in Schizosaccharomyces pombe.

D Zhou, D Frendewey, S M Lobo Ruppert

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 33 citations in OpenAlex.

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  13. Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

D ZhouDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, 35294, USA.
D Frendewey
S M Lobo Ruppert
University of Alabama at Birmingham · USRegeneron (United States) · US

Funding

HUMAN TRANSCRIPTION FACTOR IIIBR01GM051908 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LOBO-RUPPERT, SUSAN MARY · 1995 to 1999
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NIGMS NIH HHS R01 GM51908
6 · The paper itself

Abstract

Like its homologs in higher eukaryotes, the U2 snRNA in Schizosaccharomyces pombe is transcribed by RNA polymerase II and is not polyadenylated. Instead, an RNA stem-loop structure located downstream of the U2 snRNA coding sequence and transcribed as part of a 3' extended precursor serves as a signal for 3'-end formation. We have identified three mutants that have temperature-sensitive defects in U2 snRNA 3'-end formation. In these mutants, the synthesis of the major snRNAs is also affected and unprocessed rRNA precursors accumulate at the restrictive temperature. Two of these mutants contain the same G-to-A transition within the pac1 gene, whereas the third contains a lesion outside the pac1 locus, indicating that at least two genes are involved. The pac1+ gene is codominant with the mutant allele and can rescue the temperature-sensitive phenotype and the defects in snRNA and rRNA synthesis, if overexpressed. In vitro, Pac1p, an RNase III homolog, can cleave a synthetic U2 precursor within the signal for 3'-end formation, generating a product that is a few nucleotides longer than mature U2 snRNA. In addition, U2 precursors are cleaved and trimmed to the mature size in extracts made from wild-type S. pombe cells. However, extracts made from pac1 mutant cells are unable to do so unless they are supplemented with purified recombinant Pac1p. Thus, the 3' end of S. pombe U2 snRNA is generated by a processing reaction that requires Pac1p and an additional component, and can be dissociated from transcription in vitro.

Indexed as

Amino Acid SequenceBase SequenceEndoribonucleasesFungal ProteinsModels, GeneticMolecular Sequence DataMutagenesisNucleic Acid ConformationRibonuclease IIIRNA Processing, Post-TranscriptionalRNA, Small NuclearSchizosaccharomycesSchizosaccharomyces pombe ProteinsTemperatureEndoribonucleasesFungal Proteinspac1 protein, S pombeRibonuclease IIIRNA, Small NuclearSchizosaccharomyces pombe Proteins

Identifiers

PMID10445882
PMCPMC1369831
OpenAlexW1970260032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.