Evidence map›Paper›PMID 10438866›Full record

ArticleJournal of virology1999

A heterogeneous nuclear ribonucleoprotein A/B-related protein binds to single-stranded DNA near the 5' end or within the genome of feline parvovirus and can modify virus replication.

D Wang, C R Parrish

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

D WangJames A. Baker Institute, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
C R Parrish
Cornell University · US

Funding

PARVOVIRUS STRUCTURE, FUNCTION AND HOST RANGER01AI028385 · NIAID · CORNELL UNIVERSITY ITHACA · PI PARRISH, COLIN R. · 1990 to 2011
$3.0M
NIAID NIH HHS AI28385NIAID NIH HHS R01 AI028385
6 · The paper itself

Abstract

Phage display of cDNA clones prepared from feline cells was used to identify host cell proteins that bound to DNA-containing feline panleukopenia virus (FPV) capsids but not to empty capsids. One gene found in several clones encoded a heterogeneous nuclear ribonucleoprotein (hnRNP)-related protein (DBP40) that was very similar in sequence to the A/B-type hnRNP proteins. DBP40 bound specifically to oligonucleotides representing a sequence near the 5' end of the genome which is exposed on the outside of the full capsid but did not bind most other terminal sequences. Adding purified DBP40 to an in vitro fill-in reaction using viral DNA as a template inhibited the production of the second strand after nucleotide (nt) 289 but prior to nt 469. DBP40 bound to various regions of the viral genome, including a region between nt 295 and 330 of the viral genome which has been associated with transcriptional attenuation of the parvovirus minute virus of mice, which is mediated by a stem-loop structure of the DNA and cellular proteins. Overexpression of the protein in feline cells from a plasmid vector made them largely resistant to FPV infection. Mutagenesis of the protein binding site within the 5' end viral genome did not affect replication of the virus.

Indexed as

Heterogeneous-Nuclear Ribonucleoprotein Group A-BVirus ReplicationAmino Acid SequenceAnimalsBase SequenceCatsCell LineChickensDNA-Binding ProteinsDNA, ComplementaryDNA ReplicationDNA, Single-StrandedDNA, ViralFeline Panleukopenia VirusGene ExpressionGenome, ViralDNA-Binding ProteinsDNA, ComplementaryDNA, Single-StrandedDNA, ViralHeterogeneous-Nuclear Ribonucleoprotein Group A-BHeterogeneous-Nuclear RibonucleoproteinshnRNP A-B related protein, catOligodeoxyribonucleotidesRecombinant Fusion ProteinsRibonucleoproteins

Identifiers

PMID10438866
PMCPMC104303
OpenAlexW2130033818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.