Evidence map›Paper›PMID 10438844›Full record

ArticleJournal of virology1999

Sequence requirements for the assembly of simian virus 40 T antigen and the T-antigen origin binding domain on the viral core origin of replication.

H Y Kim, B A Barbaro, W S Joo, A E Prack, K R Sreekumar, P A Bullock

Abstract read
In one paragraph

Article in Journal of virology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Transcription of click-linked DNA in human cells.Angewandte Chemie (International ed. in English) · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

H Y KimDepartment of Biochemistry, Tufts University School of Medicine, Boston, Massachusetts, USA.
B A Barbaro
W S Joo
A E Prack
K R Sreekumar
P A Bullock

Funding

INITIATION OF SV40 DNA REPLICATION AND ITS REGULATIONR01GM055397 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BULLOCK, PETER AUGUSTUS · 1997 to 2010
$3.5M
STRUCTURE &FUNCTION OF THE SV40 T-AG DNA BINDING DOMAINR01GM053618 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BACHOVCHIN, WILLIAM W · 1996 to 2004
$1.2M
NIGMS NIH HHS 5R01GM53618NIGMS NIH HHS 9R01GM55397NIGMS NIH HHS R01 GM053618NIGMS NIH HHS R01 GM055397
6 · The paper itself

Abstract

The regions of the simian virus 40 (SV40) core origin that are required for stable assembly of virally encoded T antigen (T-ag) and the T-ag origin binding domain (T-ag-obd(131-260)) have been determined. Binding of the purified T-ag-obd(131-260) is mediated by interactions with the central region of the core origin, site II. In contrast, T-ag binding and hexamer assembly requires a larger region of the core origin that includes both site II and an additional fragment of DNA that may be positioned on either side of site II. These studies indicate that in the context of T-ag, the origin binding domain can engage the pentanucleotides in site II only if a second region of T-ag interacts with one of the flanking sequences. The requirements for T-ag double-hexamer assembly are complex; the nucleotide cofactor present in the reaction modulates the sequence requirements for oligomerization. Nevertheless, these experiments provide additional evidence that only a subset of the SV40 core origin is required for assembly of T-ag double hexamers.

Indexed as

DNA ReplicationDNA, ViralReplication OriginVirus ReplicationAnimalsAntigens, Polyomavirus TransformingBase SequenceBinding SitesMolecular Sequence DataRecombinant Fusion ProteinsSimian virus 40Structure-Activity RelationshipAntigens, Polyomavirus TransformingDNA, ViralRecombinant Fusion Proteins

Identifiers

PMID10438844
PMCPMC104281

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.