Evidence map›Paper›PMID 10438776›Full record

ArticleJournal of bacteriology1999

Essential components of the Ti plasmid trb system, a type IV macromolecular transporter.

P L Li, I Hwang, H Miyagi, H True, S K Farrand

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 64 citations in OpenAlex.

  1. Genomic characterization of a clonal emergentApplied and environmental microbiology · 2024
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  8. Pathogens (Basel, Switzerland) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

P L LiDepartments of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
I Hwang
H Miyagi
H True
S K Farrand
University of Illinois Urbana-Champaign · US

Funding

CELL-CELL SIGNALLING IN MICROBE-HOST INTERACTIONSR01GM052465 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI FARRAND, STEPHEN KENDALL · 1995 to 2007
$2.6M
NIGMS NIH HHS R01 GM052465NIGMS NIH HHS R01GM52465
6 · The paper itself

Abstract

The trb operon from pTiC58 is one of three loci that are required for conjugal transfer of this Ti plasmid. The operon, which probably codes for the mating bridge responsible for pair formation and DNA transfer, contains 12 genes, 11 of which are related to genes from other members of the type IV secretion system family. The 12th gene, traI, codes for production of Agrobacterium autoinducer (AAI). Insertion mutations were constructed in each of the 12 genes, contained on a full-length clone of the trb region, using antibiotic resistance cassettes or a newly constructed transposon. This transposon, called mini-Tn5Ptrb, was designed to express genes downstream of the insertion site from a promoter regulated by TraR and AAI. Each mutation could trans complement downstream Tn3HoHo1 insertions in the trb operon of full-sized Ti plasmids. When marker-exchanged into the transfer-constitutive Ti plasmid pTiC58DeltaaccR mutations in trbB, -C, -D, -E, -L, -F, -G, and -H abolished conjugal transfer from strain UIA5, which lacks the 450-kb catabolic plasmid pAtC58. However, these mutants retained residual conjugal transfer activity when tested in strain NT1, which contains this large plasmid. The trbJ mutant failed to transfer at a detectable frequency from either strain, while the trbI mutant transferred at very low but detectable levels from both donors. Only the trbK mutant was unaffected in conjugal transfer from either donor. Transfer of each of the marker-exchange mutants was restored by a clone expressing only the wild-type allele of the corresponding mutant trb gene. An insertion mutation in traI abolished the production of AAI and also conjugal transfer. This defect was restored by culturing the mutant donor in the presence of AAI. We conclude that all of the trb genes except trbI and trbK are essential for conjugal transfer of pTiC58. We also conclude that mutations in any one of the trb genes except traI and trbJ can be complemented by functions coded for by pAtC58.

Indexed as

OperonPlasmidsAgrobacterium tumefaciensBacterial Outer Membrane ProteinsBacterial ProteinsBase SequenceBiological TransportConjugation, GeneticDNA HelicasesDNA Mutational AnalysisDNA Transposable ElementsEscherichia coli ProteinsGene Expression Regulation, BacterialGenetic Complementation TestMolecular Sequence DataMutagenesisBacterial Outer Membrane ProteinsBacterial ProteinsDNA HelicasesDNA Transposable ElementsEscherichia coli ProteinsTraI protein, E coliTraJ protein, bacteriaTraR protein, Agrobacterium tumefaciens

Identifiers

PMID10438776
PMCPMC93993
OpenAlexW2138826514

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.