Evidence map›Paper›PMID 10433929›Full record

ArticleThe American journal of pathology1999

Detection of immunoglobulin kappa light chain rearrangements by polymerase chain reaction. An improved method for detecting clonal B-cell lymphoproliferative disorders.

J Z Gong, S Zheng, R Chiarle, C De Wolf-Peeters, G Palestro, G Frizzera, G Inghirami

Open access · hybridAbstract read
In one paragraph

Article in The American journal of pathology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 60 citations in OpenAlex.

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  13. Molecular diagnostic approach to non-Hodgkin's lymphoma.The Journal of molecular diagnostics : JMD · 2000
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

J Z GongDivision of Hematopathology/Molecular Pathology Laboratory, Department of Pathology, Kaplan Comprehensive Cancer Center, New York, USA.
S Zheng
R Chiarle
C De Wolf-Peeters
G Palestro
G Frizzera
G Inghirami
New York University · USKU Leuven · BE

Funding

PROPERTIES OF LYMPHOID TUMOR CELLS IN VIVO-IN VITROR01CA014462 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TSIAGBE, VINCENT K · 1985 to 2002
$832k
MOLECULAR PATHOLOGY OF HODGKIN'S DISEASE &KI-1 LYMPHOMAR55CA064033 · NCI · NEW YORK UNIVERSITY · PI INGHIRAMI, GIORGIO G · 1993 to 1993
–
NCI NIH HHS CA14462NCI NIH HHS CA64033NCI NIH HHS CA66229
6 · The paper itself

Abstract

The clonal determination of B-cell lymphoproliferative disorders by immunoglobulin heavy chain (IgH) rearrangement by polymerase chain reaction (PCR) is widely used. However, few attempts have been made to detect immunoglobulin kappa light chain (Igkappa) gene rearrangement using PCR. We studied 145 cases of B-cell neoplasms, along with 58 atypical and 18 reactive lymphoproliferative disorders, using newly designed degenerate oligoprimers recognizing the framework 3 (FR3kappa) and the joint (Jkappa) regions of the Igkappa gene. PCR products were analyzed on nondenaturing polyacrylamide gel (ndPAGE). Clonal B-cell determination was further investigated using IgH rearrangement and t(11:14) or t(14:18). By combining these methods, we detected either clonality or translocation in 117 of 137 cases (85%) in mature B-cell neoplasms. The additional analysis of Igkappa rearrangement improved sensitivity from 66% to 85%. To investigate whether the Ig gene configuration could be characterized using Igkappa PCR in B-cell neoplasms showing severe breakdown of genomic DNA, 18 selected cases were analyzed. Successful amplification was detected in 72% of the cases using either FR3/2-JH and/or FR3Jkappa oligoprimers. Finally, clonality was detected in 21 of 58 atypical B-cell proliferations, and among them, the atypical marginal cell (54%) and atypical large cell (50%) proliferations showed the highest frequency of clonal immunoglobulin gene products. We concluded that PCR/ndPAGE analysis of Igkappa is a sensitive, rapid, and efficient method for assessing clonality in conjunction with IgH and specific translocation analysis. This approach is particularly useful in the characterization of B-cell lymphoproliferative disorders in archival material with poor preservation of the genomic DNA.

Indexed as

Gene Rearrangement, B-Lymphocyte, Light ChainClone CellsElectrophoresis, Polyacrylamide GelHumansLeukemiaLymph NodesLymphomaLymphoproliferative DisordersPolymerase Chain ReactionPolymorphism, Single-Stranded ConformationalTumor Cells, Cultured

Identifiers

PMID10433929
PMCPMC1866846
OpenAlexW118906383

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.