Evidence map›Paper›PMID 10430873›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Crystal structure and mechanism of histone acetylation of the yeast GCN5 transcriptional coactivator.

R C Trievel, J R Rojas, D E Sterner, R N Venkataramani, L Wang, J Zhou, C D Allis, S L Berger, R Marmorstein

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 182 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Highlighting the Unique Roles of RadicalJournal of bacteriology · 2022
    Review
  8. Article
  9. The Ada2/Ada3/Gcn5/Sgf29 histone acetyltransferase module.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  10. Catalysis by protein acetyltransferase Gcn5.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. lncRNA GCAWKR Promotes Gastric Cancer Development by Scaffolding the Chromatin Modification Factors WDR5 and KAT2A.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  15. Structural basis for activation of SAGA histone acetyltransferase Gcn5 by partner subunit Ada2.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Recognition of ubiquitinated nucleosomes.Current opinion in structural biology · 2017
    Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

R C TrievelThe Wistar Institute, University of Pennsylvania, Philadelphia, PA 19104, USA.
J R Rojas
D E Sterner
R N Venkataramani
L Wang
J Zhou
C D Allis
S L Berger
R Marmorstein
University of Rochester · USThe Wistar Institute · USUniversity of Pennsylvania · US

Funding

Chromatin regulatory mechanisms in eukaryotic gametogenesisR01GM055360 · NIGMS · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 1998 to 2015
$5.1M
ENZYMOLOGY &BIOLOGICAL FUNC OF HISTONE ACETYLATIONR37GM053512 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1999 to 2008
$4.2M
STRUCTURE AND FUNCTION OF DNA REGULATORY PROTEINSR01GM052880 · NIGMS · WISTAR INSTITUTE · PI MARMORSTEIN, RONEN · 1997 to 2010
$2.8M
YEAST TRANSCRIPTIONAL ADAPTORS IN NUCLEOSOME ACETYLATIONF32GM019211 · NIGMS · WISTAR INSTITUTE · PI STERNER, DAVID E · 1998 to 1999
–
NUCLEAR DETERMINATION AND DIFFERENTIATION IN DEVELOPMENTR01GM053512 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1995 to 1998
–
NIGMS NIH HHS F32 GM019211NIGMS NIH HHS GM-52880NIGMS NIH HHS GM-53512NIGMS NIH HHS GM-55360NIGMS NIH HHS R01 GM052880NIGMS NIH HHS R01 GM055360NIGMS NIH HHS R37 GM053512
6 · The paper itself

Abstract

The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. Here, we present the high resolution crystal structure of the HAT domain of yGCN5 and probe the functional importance of a conserved glutamate residue. The structure reveals a central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase. A pronounced cleft lying above this core, and flanked by N- and C-terminal regions that show no sequence conservation within N-acetyltransferase enzymes, is implicated by cross-species conservation and mutagenesis studies to be a site for histone substrate binding and catalysis. Located at the bottom of this cleft is a conserved glutamate residue (E173) that is in position to play an important catalytic role in histone acetylation. Functional analysis of an E173Q mutant yGCN5 protein implicates glutamate 173 to function as a general base for catalysis. Together, a correlation of the yGCN5 structure with functionally debilitating yGCN5 mutations provides a paradigm for understanding the structure/function relationships of the growing number of transcriptional regulators that function as histone acetyltransferase enzymes.

Indexed as

DNA-Binding ProteinsSaccharomyces cerevisiae ProteinsAcetylationAcetyltransferasesAmino Acid SequenceAmino Acid SubstitutionComputer GraphicsCrystallography, X-RayFungal ProteinsHistone AcetyltransferasesHistonesHumansModels, MolecularMolecular Sequence DataMutagenesis, Site-Directedp300-CBP-Associated FactorAcetyltransferasesDNA-Binding ProteinsFungal ProteinsGCN5 protein, S cerevisiaeHistone AcetyltransferasesHistonesp300-CBP-Associated FactorProtein KinasesRecombinant ProteinsSaccharomyces cerevisiae ProteinsTrans-Activators

Identifiers

PMID10430873
PMCPMC17710
OpenAlexW2088623909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.