Evidence map›Paper›PMID 10430565›Full record

ArticleGenetics1999

Genetics of nitrogen regulation in Methanococcus maripaludis.

P S Kessler, J A Leigh

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Expression of V-nitrogenase and Fe-nitrogenase inApplied and environmental microbiology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Genetic Study ofMicrobiology spectrum · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

P S KesslerDepartment of Microbiology, University of Washington, Seattle, Washington 98195, USA.
J A Leigh
University of Washington · US

Funding

Transcriptional Nitrogen Regulation in MethanococcusR01GM055255 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEIGH, JOHN A · 1998 to 2007
$1.4M
NIGMS NIH HHS GM-55255
6 · The paper itself

Abstract

We have used genetic methods in Methanococcus maripaludis to study nitrogen metabolism and its regulation. We present evidence for a "nitrogen regulon" in Methanococcus and Methanobacterium species containing genes of nitrogen metabolism that are regulated coordinately at the transcriptional level via a common repressor binding site sequence, or operator. The implied mechanism for regulation resembles the general bacterial paradigm for repression, but contrasts with well-known mechanisms of nitrogen regulation in bacteria, which occur by activation. Genes in the nitrogen regulons include those for nitrogen fixation, glutamine synthetase, (methyl)ammonia transport, the regulatory protein GlnB, and ammonia-dependent NAD synthetase, as well as a gene of unknown function. We also studied the function of two novel GlnB homologues that are encoded within the nif gene cluster of diazotrophic methanogens. The phenotype resulting from a glnB null mutation in M. maripaludis provides direct evidence that glnB-like genes are involved in "ammonia switch-off," the post-transcriptional inhibition of nitrogen fixation upon addition of ammonia. Finally, we show that the gene nifX is not required for nitrogen fixation, in agreement with findings in several bacteria. These studies illustrate the utility of genetic methods in M. maripaludis and show the enhanced perspective that studies in the Archaea can bring to known biological systems.

Indexed as

Gene Expression Regulation, ArchaealGenes, ArchaealAmino Acid SequenceArchaeal ProteinsBacterial ProteinsBinding SitesMethanococcusMolecular Sequence DataMutagenesis, Site-DirectedNitrogen FixationPII Nitrogen Regulatory ProteinsRegulonRepressor ProteinsSequence AlignmentSequence DeletionSequence Homology, Amino AcidArchaeal ProteinsBacterial ProteinsNifX protein, Methanococcus maripaludisPIID regulatory protein, BacteriaPII Nitrogen Regulatory ProteinsRepressor Proteins

Identifiers

PMID10430565
PMCPMC1460710
OpenAlexW2110722213

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.