Evidence map›Paper›PMID 10427012›Full record

ArticleApplied and environmental microbiology1999

Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake.

A J Holmes, P Roslev, I R McDonald, N Iversen, K Henriksen, J C Murrell

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 293 citations in OpenAlex.

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  12. Microbial oxidation of atmospheric trace gases.Nature reviews. Microbiology · 2022
    Review
  13. Article
  14. Article
  15. Microbial roles in cave biogeochemical cycling.Frontiers in microbiology · 2022
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Widespread soil bacterium that oxidizes atmospheric methane.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

A J HolmesDepartment of Biological Sciences, University of Warwick, Coventry, CV4 7AL, United Kingdom.
P Roslev
I R McDonald
N Iversen
K Henriksen
J C Murrell
Aalborg University · DKUniversity of Warwick · GBMacquarie University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The global methane cycle includes both terrestrial and atmospheric processes and may contribute to feedback regulation of the climate. Most oxic soils are a net sink for methane, and these soils consume approximately 20 to 60 Tg of methane per year. The soil sink for atmospheric methane is microbially mediated and sensitive to disturbance. A decrease in the capacity of this sink may have contributed to the approximately 1%. year(-1) increase in the atmospheric methane level in this century. The organisms responsible for methane uptake by soils (the atmospheric methane sink) are not known, and factors that influence the activity of these organisms are poorly understood. In this study the soil methane-oxidizing population was characterized by both labelling soil microbiota with (14)CH(4) and analyzing a total soil monooxygenase gene library. Comparative analyses of [(14)C]phospholipid ester-linked fatty acid profiles performed with representative methane-oxidizing bacteria revealed that the soil sink for atmospheric methane consists of an unknown group of methanotrophic bacteria that exhibit some similarity to type II methanotrophs. An analysis of monooxygenase gene libraries from the same soil samples indicated that an unknown group of bacteria belonging to the alpha subclass of the class Proteobacteria was present; these organisms were only distantly related to extant methane-oxidizing strains. Studies on factors that affect the activity, population dynamics, and contribution to global methane flux of "atmospheric methane oxidizers" should be greatly facilitated by use of biomarkers identified in this study.

Indexed as

Soil MicrobiologyAmino Acid SequenceBase SequenceCloning, MolecularDNA PrimersEcosystemGenes, BacterialMethaneMethylococcaceaeMolecular Sequence DataOxidoreductasesOxygenasesPhylogenySequence Homology, Amino Acidammonia monooxygenaseDNA PrimersMethanemethane monooxygenaseOxidoreductasesOxygenases

Identifiers

PMID10427012
PMCPMC91497
OpenAlexW1839637775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.