Evidence map›Paper›PMID 10417280›Full record

ArticleAmerican journal of human genetics1999

Chromosome breakage in the Prader-Willi and Angelman syndromes involves recombination between large, transcribed repeats at proximal and distal breakpoints.

J M Amos-Landgraf, Y Ji, W Gottlieb, T Depinet, A E Wandstrat, S B Cassidy, D J Driscoll, P K Rogan, S Schwartz, R D Nicholls

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02381457 (SNP-based Microdeletion and Aneuploidy RegisTry), which is not on this map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02381457 completednot on this mapstarted 2015, after this paper: background citation

SNP-based Microdeletion and Aneuploidy RegisTry

Typeobservational_patient_registrySponsorNatera, Inc.Ran2015 to 2020Enrolled20,960Conditions22q11 Deletion Syndrome, DiGeorge Syndrome, Trisomy 21, Trisomy 18
3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 281 citations in OpenAlex.

  1. Article
  2. Structural polymorphism and diversity of human segmental duplications.bioRxiv : the preprint server for biology · 2024
    Article
  3. Epigenetics in rare neurological diseases.Frontiers in cell and developmental biology · 2024
    Review
  4. Article
  5. Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.International journal of molecular sciences · 2023
    Article
  6. Prader-Willi and Angelman Syndromes: Mechanisms and Management.The application of clinical genetics · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 1 country.

J M Amos-LandgrafDepartment of Genetics, Case Western Reserve University School of Medicine, and Center for Human Genetics, University Hospitals of Cleveland, Cleveland, OH 44106-4955, USA.
Y Ji
W Gottlieb
T Depinet
A E Wandstrat
S B Cassidy
D J Driscoll
P K Rogan
S Schwartz
R D Nicholls
Case Western Reserve University · USCenter for Human Genetics · USUniversity Hospitals of Cleveland · USChildren's Mercy Hospital · USFlorida College · USPhilips (United States) · USUniversity School · US

Funding

TRAINING IN GENETICST32GM008613 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI SALZ, HELEN KAREN · 1996 to 2010
$3.1M
NIGMS NIH HHS GM08613
6 · The paper itself

Abstract

Prader-Willi syndrome (PWS) and Angelman syndrome (AS) are distinct neurobehavioral disorders that most often arise from a 4-Mb deletion of chromosome 15q11-q13 during paternal or maternal gametogenesis, respectively. At a de novo frequency of approximately.67-1/10,000 births, these deletions represent a common structural chromosome change in the human genome. To elucidate the mechanism underlying these events, we characterized the regions that contain two proximal breakpoint clusters and a distal cluster. Novel DNA sequences potentially associated with the breakpoints were positionally cloned from YACs within or near these regions. Analyses of rodent-human somatic-cell hybrids, YAC contigs, and FISH of normal or rearranged chromosomes 15 identified duplicated sequences (the END repeats) at or near the breakpoints. The END-repeat units are derived from large genomic duplications of a novel gene (HERC2), many copies of which are transcriptionally active in germline tissues. One of five PWS/AS patients analyzed to date has an identifiable, rearranged HERC2 transcript derived from the deletion event. We postulate that the END repeats flanking 15q11-q13 mediate homologous recombination resulting in deletion. Furthermore, we propose that active transcription of these repeats in male and female germ cells may facilitate the homologous recombination process.

Indexed as

Guanine Nucleotide Exchange FactorsAngelman SyndromeAnimalsCell LineChromosome BreakageChromosome DeletionChromosomes, Human, Pair 15Cloning, MolecularContig MappingFemaleGene DuplicationGerm CellsGTP-Binding ProteinsHumansHybrid CellsIn Situ Hybridization, FluorescenceGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsHERC2 protein, humanRNA, MessengerUbiquitin-Protein Ligases

Identifiers

PMID10417280
PMCPMC1377936
OpenAlexW2168854455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.