Evidence map›Paper›PMID 10398682›Full record

ArticleGenes & development1999

Crystal structure of the conserved core of the herpes simplex virus transcriptional regulatory protein VP16.

Y Liu, W Gong, C C Huang, W Herr, X Cheng

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Genes & development, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Antimicrobial Peptides: An Update on Classifications and Databases.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Antimicrobial peptides.Pharmaceuticals (Basel, Switzerland) · 2013
    Article
  16. Article
  17. Octamer-binding transcription factors: genomics and functions.Frontiers in bioscience (Landmark edition) · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Y LiuCold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
W Gong
C C Huang
W Herr
X Cheng
Stony Brook University · USCold Spring Harbor Laboratory · USEmory University · USState University of New York · US

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
NCI NIH HHS CA-13106NCI NIH HHS P01 CA013106
6 · The paper itself

Abstract

On infection, the herpes simplex virus (HSV) virion protein VP16 (Vmw65; alphaTIF) forms a transcriptional regulatory complex-the VP16-induced complex-with two cellular proteins, HCF and Oct-1, on VP16-responsive cis-regulatory elements in HSV immediate-early promoters called TAATGARAT. Comparison of different HSV VP16 sequences reveals a conserved core region that is sufficient for VP16-induced complex formation. The crystal structure of the VP16 core has been determined at 2.1 A resolution. The results reveal a novel, seat-like protein structure. Together with the activity of mutant VP16 proteins, the structure of free VP16 suggests that it contains (1) a disordered carboxy-terminal region that associates with HCF, Oct-1, and DNA in the VP16-induced complex, and (2) a structured region involved in virion assembly and possessing a novel DNA-binding surface that differentiates among TAATGARAT VP16-response elements.

Indexed as

Protein ConformationAmino Acid SequenceCrystallizationCrystallography, X-RayDNADNA-Binding ProteinsGene Expression Regulation, ViralHerpes Simplex Virus Protein Vmw65HerpesviridaeHost Cell Factor C1Macromolecular SubstancesModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedOctamer Transcription Factor-1Recombinant Fusion ProteinsDNADNA-Binding ProteinsHerpes Simplex Virus Protein Vmw65Host Cell Factor C1Macromolecular SubstancesOctamer Transcription Factor-1Recombinant Fusion ProteinsTranscription Factors

Identifiers

PMID10398682
PMCPMC316849
OpenAlexW2015418243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.