Evidence map›Paper›PMID 10364332›Full record

ArticleJournal of virology1999

The P236L delavirdine-resistant human immunodeficiency virus type 1 mutant is replication defective and demonstrates alterations in both RNA 5'-end- and DNA 3'-end-directed RNase H activities.

P Gerondelis, R H Archer, C Palaniappan, R C Reichman, P J Fay, R A Bambara, L M Demeter

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 86 citations in OpenAlex.

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  18. Mining protein dynamics from sets of crystal structures using "consensus structures".Protein science : a publication of the Protein Society · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

P GerondelisDepartment of Medicine, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, USA.
R H Archer
C Palaniappan
R C Reichman
P J Fay
R A Bambara
L M Demeter
Bipar · FRUniversity of Rochester · USInstitute of Molecular Biology and Biophysics · RU

Funding

YOHIMBINE CHALLENGE IN PARKINSONIAN PATIENTS WITH PANIC DISORDERM01RR000044 · NCRR · UNIVERSITY OF ROCHESTER · PI GUZICK, DAVID S · 1985 to 2006
$13.8M
WOMEN'S HEALTH AGENDAU01AI027658 · NIAID · UNIVERSITY OF ROCHESTER · PI REICHMAN, RICHARD C. · 1988 to 2006
$13.4M
DNA SYNTHESIS AND RECOMBINATION BY HIV DNA POYLMERASER01GM049573 · NIGMS · UNIVERSITY OF ROCHESTER · PI BAMBARA, ROBERT A · 1993 to 2011
$4.0M
Impact of NNRTI Resistance on RNase H &HIV ReplicationR01AI041387 · NIAID · UNIVERSITY OF ROCHESTER · PI DYKES, CARRIE A · 1998 to 2011
$3.3M
NCRR NIH HHS M01 RR000044NCRR NIH HHS MO1-RR00044-34S2NIAID NIH HHS N0-AI-27658NIAID NIH HHS R01 AI041387NIAID NIH HHS R01-AI041387NIAID NIH HHS U01 AI027658NIGMS NIH HHS R01 GM049573
6 · The paper itself

Abstract

The nonnucleoside reverse transcriptase (RT) inhibitor (NNRTI) delavirdine (DLV) selects in vitro for the human immunodeficiency virus type 1 (HIV-1) RT mutation P236L, which confers high-level resistance to DLV but not other NNRTIs. Unexpectedly, P236L has developed infrequently in HIV-1 isolates obtained from patients receiving DLV; K103N is the predominant resistance mutation observed in that setting. We characterized the replication fitness of viruses derived from pNL4-3 containing P236L or K103N in both H9 and primary human peripheral blood mononuclear cell cultures infected in parallel with the two mutants. In the absence of DLV, p24 production by wild-type virus occurred more rapidly and to higher levels than with either mutant; P236L consistently demonstrated a two- to threefold decrease in p24 relative to K103N. At low levels of DLV, growth of wild-type virus was severely inhibited, and K103N replicated two- to threefold more efficiently than P236L. At high concentrations of DLV, P236L replication and K103N replication were both inhibited. Recombinant RTs containing K103N or P236L were analyzed for DNA polymerization on heteropolymeric RNA templates and RNase H degradation of RNA-DNA hybrids. Neither mutant demonstrated defects in polymerization. K103N demonstrated normal RNA 5'-end-directed RNase H cleavage and slowed DNA 3'-end-directed RNase H cleavage compared to wild-type RT. P236L demonstrated slowing of both DNA 3'-end- and RNA 5'-end-directed RNase H cleavage, consistent with its reduced replication efficiency relative to K103N. These data suggest that NNRTI resistance mutations can lead to reductions in the efficiency of RNase H cleavage, which may contribute to a reduction in the replication fitness of HIV-1.

Indexed as

5' Untranslated RegionsAnti-HIV AgentsCell LineDefective VirusesDelavirdineDNA, ViralDrug Resistance, MicrobialHeLa CellsHIV-1HIV Reverse TranscriptaseHumansKineticsMutagenesisReverse Transcriptase InhibitorsRibonuclease HRNA, Viral5' Untranslated RegionsAnti-HIV AgentsDelavirdineDNA, ViralHIV Reverse TranscriptaseReverse Transcriptase InhibitorsRibonuclease HRNA, Viral

Identifiers

PMID10364332
PMCPMC112641
OpenAlexW2163415118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.