Evidence map›Paper›PMID 10364158›Full record

ArticleGenes & development1999

Cell cycle-regulated histone acetylation required for expression of the yeast HO gene.

J E Krebs, M H Kuo, C D Allis, C L Peterson

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 276 citations in OpenAlex.

  1. Article
  2. Frontiers in epigenetics and epigenomics · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Chromatin remodelers: We are the drivers!!Nucleus (Austin, Tex.) · 2016
    Review
  9. Review
  10. Review
  11. Article
  12. Creating memories of transcription.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Stochastic expression and epigenetic memory at the yeast HO promoter.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

J E KrebsProgram in Molecular Medicine and Department of Biochemistry and Molecular Biology, University of Massachusetts Medical Center, Worcester, Massachusetts 01605, USA.
M H Kuo
C D Allis
C L Peterson
University of Massachusetts Chan Medical School · USUniversity of Virginia · US

Funding

Analysis of the yeast SWI1, SWI2, and SWI3 proteinsR37GM049650 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI PETERSON, CRAIG L · 2006 to 2015
$4.9M
YEAST SWI1, SWI2, AND SWI3 PROTEINSR01GM049650 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI PETERSON, CRAIG L · 1993 to 2016
$2.6M
NIGMS NIH HHS GM49650NIGMS NIH HHS R01 GM049650NIGMS NIH HHS R37 GM049650
6 · The paper itself

Abstract

Expression of the yeast HO gene in late G1 of the cell cycle requires the SWI/SNF chromatin remodeling complex, the Gcn5p histone acetyltransferase, and two different sequence-specific transcriptional activators, Swi5p and Swi4p/Swi6p. We have used chromatin immunoprecipitation assays to investigate the role of each of these trans-acting factors in establishing a cell cycle-regulated domain of histone acetylation surrounding the HO upstream regulatory region. We detect a approximately 1-kb domain of H3 and H4 acetylation that is established in mid-G1, prior to and independent of HO transcription, which then declines with kinetics similar to inactivation of HO. This cell cycle burst of histone acetylation requires Gcn5p, SWI/SNF, and the Swi5p activator, but occurs in the absence of the Swi4p activator. We also find that inactivation of the Sin3p/Rpd3p deacetylase complex leads to a high level of acetylation at the HO locus throughout the cell cycle. We propose a sequential model for activation of HO in which the Swi5p-dependent recruitment of the Gcn5p acetyltransferase requires chromatin remodeling events by the SWI/SNF complex.

Indexed as

Cell CycleCell Cycle ProteinsDNA-Binding ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsAcetylationDeoxyribonucleases, Type II Site-SpecificFungal ProteinsG1 PhaseGene Expression Regulation, FungalGenes, FungalHistone DeacetylasesHistonesNucleosomesPromoter Regions, GeneticProtein KinasesCell Cycle ProteinsDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsFungal ProteinsHistone DeacetylasesHistonesHO protein, S cerevisiaeNucleosomesProtein KinasesRepressor ProteinsRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeSIN3 protein, S cerevisiaeSWI5 protein, S cerevisiaeTranscription Factors

Identifiers

PMID10364158
PMCPMC316758
OpenAlexW2100931229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.