Evidence map›Paper›PMID 10359603›Full record

ArticleMolecular biology of the cell1999

The phosphatidylinositol 3-phosphate binding protein Vac1p interacts with a Rab GTPase and a Sec1p homologue to facilitate vesicle-mediated vacuolar protein sorting.

G G Tall, H Hama, D B DeWald, B F Horazdovsky

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 157 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The NaMolecular biology of the cell · 2018
    Article
  5. Article
  6. Article
  7. Rab family of GTPases.Methods in molecular biology (Clifton, N.J.) · 2015
    Review
  8. Ypt/Rab GTPases: principles learned from yeast.Critical reviews in biochemistry and molecular biology · 2015
    Review
  9. A Vps21 endocytic module regulates autophagy.Molecular biology of the cell · 2014
    Article
  10. Function and regulation of the endosomal fusion and fission machineries.Cold Spring Harbor perspectives in biology · 2014
    Review
  11. Article
  12. The CORVET complex promotes tethering and fusion of Rab5/Vps21-positive membranes.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

G G TallDepartment of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75235-9038, USA.
H Hama
D B DeWald
B F Horazdovsky
The University of Texas Southwestern Medical Center · USUtah State University · US

Funding

Regulation of intracellular protein trafficR01GM055301 · NIGMS · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI HORAZDOVSKY, BRUCE F · 1997 to 2006
$1.5M
NIGMS NIH HHS GM-55301NIGMS NIH HHS R01 GM055301
6 · The paper itself

Abstract

Activated GTP-bound Rab proteins are thought to interact with effectors to elicit vesicle targeting and fusion events. Vesicle-associated v-SNARE and target membrane t-SNARE proteins are also involved in vesicular transport. Little is known about the functional relationship between Rabs and SNARE protein complexes. We have constructed an activated allele of VPS21, a yeast Rab protein involved in vacuolar protein sorting, and demonstrated an allele-specific interaction between Vps21p and Vac1p. Vac1p was found to bind the Sec1p homologue Vps45p. Although no association between Vps21p and Vps45p was seen, a genetic interaction between VPS21 and VPS45 was observed. Vac1p contains a zinc-binding FYVE finger that may bind phosphatidylinositol 3-phosphate [PtdIns(3)P]. In other FYVE domain proteins, this motif and PtdIns(3)P are necessary for membrane association. Vac1 proteins with mutant FYVE fingers still associated with membranes but showed vacuolar protein sorting defects and reduced interactions with Vps45p and activated Vps21p. Vac1p membrane association was not dependent on PtdIns(3)P, Pep12p, Vps21p, Vps45p, or the PtdIns 3-kinase, Vps34p. Vac1p FYVE finger mutant missorting phenotypes were suppressed by a defective allele of VPS34. These data indicate that PtdIns(3)P may perform a regulatory role, possibly involved in mediating Vac1p protein-protein interactions. We propose that activated-Vps21p interacts with its effector, Vac1p, which interacts with Vps45p to regulate the Golgi to endosome SNARE complex.

Indexed as

Cytoskeletal Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsAdaptor Proteins, Signal TransducingCarboxypeptidasesCathepsin ACell MembraneCoated VesiclesFungal ProteinsGTP-Binding ProteinsHybrid CellsMembrane ProteinsMunc18 ProteinsNerve Tissue ProteinsPhosphatidylinositol 3-KinasesAdaptor Proteins, Signal TransducingCarboxypeptidasesCathepsin ACytoskeletal Proteinsearly endosome antigen 1Fungal ProteinsGTP-Binding ProteinsMembrane ProteinsMunc18 ProteinsNerve Tissue ProteinsPEP7 protein, S cerevisiaePhosphatidylinositol 3-Kinasesrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSNARE ProteinsVesicular Transport ProteinsVPS45 protein, S cerevisiae

Identifiers

PMID10359603
PMCPMC25384
OpenAlexW2140843995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.