Evidence map›Paper›PMID 10348861›Full record

ArticleJournal of bacteriology1999

Regulation of alginate biosynthesis in Pseudomonas syringae pv. syringae.

M K Fakhr, A Peñaloza-Vázquez, A M Chakrabarty, C L Bender

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Microbiology spectrum · 2024
    Article
  3. Article
  4. Biofilm Formation Assay inBio-protocol · 2019
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

M K FakhrDepartment of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma 74078, USA.
A Peñaloza-Vázquez
A M Chakrabarty
C L Bender
Laboratory of Molecular Genetics · PLOklahoma State University · USUniversity of Illinois Urbana-Champaign · US

Funding

PSEUDOMONAS INFECTION IN CYSTIC FIBROSISR01AI016790 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHAKRABARTY, ANANDA MOHAN · 1985 to 2000
$250k
PSEUDOMONAS INFECTION IN CYSTIC FIBROSISR37AI016790 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHAKRABARTY, ANANDA MOHAN · 1986 to 1995
–
NIAID NIH HHS AI-16790-18
6 · The paper itself

Abstract

Both Pseudomonas aeruginosa and the phytopathogen P. syringae produce the exopolysaccharide alginate. However, the environmental signals that trigger alginate gene expression in P. syringae are different from those in P. aeruginosa with copper being a major signal in P. syringae. In P. aeruginosa, the alternate sigma factor encoded by algT (sigma22) and the response regulator AlgR1 are required for transcription of algD, a gene which encodes a key enzyme in the alginate biosynthetic pathway. In the present study, we cloned and characterized the gene encoding AlgR1 from P. syringae. The deduced amino acid sequence of AlgR1 from P. syringae showed 86% identity to its P. aeruginosa counterpart. Sequence analysis of the region flanking algR1 in P. syringae revealed the presence of argH, algZ, and hemC in an arrangement virtually identical to that reported in P. aeruginosa. An algR1 mutant, P. syringae FF5.32, was defective in alginate production but could be complemented when algR1 was expressed in trans. The algD promoter region in P. syringae (PsalgD) was also characterized and shown to diverge significantly from the algD promoter in P. aeruginosa. Unlike P. aeruginosa, algR1 was not required for the transcription of algD in P. syringae, and PsalgD lacked the consensus sequence recognized by AlgR1. However, both the algD and algR1 upstream regions in P. syringae contained the consensus sequence recognized by sigma22, suggesting that algT is required for transcription of both genes.

Indexed as

Gene Expression Regulation, BacterialSigma FactorAlginatesBacterial ProteinsBase SequenceBinding SitesCarbohydrate DehydrogenasesCloning, MolecularConsensus SequenceDNA-Binding ProteinsDNA Transposable ElementsGene Expression Regulation, EnzymologicGenetic Complementation TestMolecular Sequence DataMutagenesis, InsertionalMutationAlginatesAlgR1 protein, Pseudomonas syringaeAlgU protein, Pseudomonas aeruginosaBacterial ProteinsCarbohydrate DehydrogenasesDNA-Binding ProteinsDNA Transposable ElementsGDPmannose dehydrogenaseSigma Factor

Identifiers

PMID10348861
PMCPMC93816
OpenAlexW2083399472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.