Evidence map›Paper›PMID 10339598›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Multiplex detection of four pathogenic retroviruses using molecular beacons.

J A Vet, A R Majithia, S A Marras, S Tyagi, S Dube, B J Poiesz, F R Kramer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

  1. Review
  2. Review
  3. Turn-on RNA Mango Beacons forRNA (New York, N.Y.) · 2024
    Article
  4. Article
  5. Highly multiplex PCR assays by coupling the 5'-flap endonuclease activity ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Single Nucleotide Polymorphism Genotyping in Single-Molecule Electronic Circuits.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. A fluorescent reporter of ATP binding-competent receptor kinases.Bioorganic & medicinal chemistry letters · 2012
    Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J A VetDepartment of Molecular Genetics, Public Health Research Institute, 455 First Avenue, New York, NY 10016, USA.
A R Majithia
S A Marras
S Tyagi
S Dube
B J Poiesz
F R Kramer

Funding

SENSITIVE ASSAYS FOR PATHOGENIC RETROVIRUSES IN BLOODR01HL043521 · NHLBI · PUBLIC HEALTH RESEARCH INSTITUTE · PI KRAMER, FRED R · 1989 to 2001
$1.1M
VIRAL DETECTION IN DONATED ORGANS (VDDO)N01HB067131 · HB · JOHNSON AND JOHNSON CLINICAL DIAGNOSTICS · PI FINDLAY, JOHN · 1996 to 1997
–
NHLBI NIH HHS HB-67131NHLBI NIH HHS HL-43521NHLBI NIH HHS R01 HL043521
6 · The paper itself

Abstract

We describe a multiplex nucleic acid assay that identifies and determines the abundance of four different pathogenic retroviruses (HIV-1, HIV-2, and human T-lymphotrophic virus types I and II). Retroviral DNA sequences are amplified in a single, sealed tube by simultaneous PCR assays, and the resulting amplicons are detected in real time by the hybridization of four differently colored, amplicon-specific molecular beacons. The color of the fluorescence generated in the course of amplification identifies which retroviruses are present, and the number of thermal cycles required for the intensity of each color to rise significantly above background provides an accurate measure of the number of copies of each retroviral sequence that were present originally in the sample. Fewer than 10 retroviral genomes can be detected. Moreover, 10 copies of a rare retrovirus can be detected in the presence of 100, 000 copies of an abundant retrovirus. Ninety-six samples can be analyzed in 3 hr on a single plate, and the use of a closed-tube format eliminates crossover contamination. Utilizing previously well characterized clinical samples, we demonstrate that each of the pathogenic retroviruses can be identified correctly and no false positives occur. This assay enables the rapid and reliable screening of donated blood and transplantable tissues.

Indexed as

Genes, gagBase SequenceConserved SequenceDNA PrimersDNA, ViralHIV-1HIV-2HumansHuman T-lymphotropic virus 1Human T-lymphotropic virus 2Polymerase Chain ReactionReproducibility of ResultsSpectrometry, FluorescenceTemplates, GeneticDNA PrimersDNA, Viral

Identifiers

PMID10339598
PMCPMC26892

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.