Evidence map›Paper›PMID 10330173›Full record

ArticleMolecular and cellular biology1999

A new class of repression modules is critical for heme regulation of the yeast transcriptional activator Hap1.

A Hach, T Hon, L Zhang

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Regulation of protein function and degradation by heme, heme responsive motifs, and CO.Critical reviews in biochemistry and molecular biology · 2022
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Heme sensor proteins.The Journal of biological chemistry · 2013
    Review
  8. Article
  9. Review
  10. Heme controls the regulation of protein tyrosine kinases Jak2 and Src.Biochemical and biophysical research communications · 2010
    Article
  11. Regulation of the HAP1 gene involves positive actions of histone deacetylases.Biochemical and biophysical research communications · 2007
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

A HachDepartment of Biochemistry, NYU Medical Center, New York, New York 10016, USA.
T Hon
L Zhang
NYU Langone Health · US

Funding

MECHANISMS OF HEME SIGNALING IN EUKARYOTIC CELLSR01GM053453 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZHANG, LI · 1997 to 2001
$477k
NIGMS NIH HHS GM53453
6 · The paper itself

Abstract

Heme plays key regulatory roles in numerous molecular and cellular processes for systems that sense or use oxygen. In the yeast Saccharomyces cerevisiae, oxygen sensing and heme signaling are mediated by heme activator protein 1 (Hap1). Hap1 contains seven heme-responsive motifs (HRMs): six are clustered in the heme domain, and a seventh is near the activation domain. To determine the functional role of HRMs and to define which parts of Hap1 mediate heme regulation, we carried out a systematic analysis of Hap1 mutants with various regions deleted or mutated. Strikingly, the data show that HRM1 to -6, located in the previously designated Hap1 heme domain, have little impact on heme regulation. All seven HRMs are dispensable for Hap1 repression in the absence of heme, but HRM7 is required for Hap1 activation by heme. More importantly, we show that a novel class of repression modules-RPM1, encompassing residues 245 to 278; RPM2, encompassing residues 1061 to 1185; and RPM3, encompassing residues 203 to 244-is critical for Hap1 repression in the absence of heme. Biochemical analysis indicates that RPMs mediate Hap1 repression, at least partly, by the formation of a previously identified higher-order complex termed the high-molecular-weight complex (HMC), while HRMs mediate heme activation by permitting heme binding and the disassembly of the HMC. These findings provide significant new insights into the molecular interactions critical for Hap1 repression in the absence of heme and Hap1 activation by heme.

Indexed as

DNA-(Apurinic or Apyrimidinic Site) LyaseGene Expression Regulation, Fungalbeta-GalactosidaseBlotting, WesternCarbon-Oxygen LyasesElectrophoresis, Polyacrylamide GelHemeModels, GeneticMutagenesis, Site-DirectedRepressor ProteinsSaccharomyces cerevisiaebeta-GalactosidaseCarbon-Oxygen LyasesDNA-(Apurinic or Apyrimidinic Site) LyaseHemeRepressor Proteins

Identifiers

PMID10330173
PMCPMC104392
OpenAlexW2102703208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.