Evidence map›Paper›PMID 10225930›Full record

ArticleInfection and immunity1999

Localization of HArep-containing genes on the chromosome of Porphyromonas gingivalis W83.

J P Lewis, F L Macrina

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J P LewisInstitute of Oral and Craniofacial Molecular Biology, Virginia Commonwealth University, Richmond, Virginia 23298-0566, USA.
F L Macrina
Virginia Commonwealth University · US

Funding

STUDIES ON THE GENETICS OF ORAL MICROFLORAR01DE004224 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MACRINA, FRANCIS L · 1985 to 2000
$267k
COMPLEMENT AND PERIODONTAL PATHOGENIC MICROORGANISMSR01DE007606 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI SCHENKEIN, HARVEY ALLEN · 1986 to 1993
–
STUDIES ON THE GENETICS OF ORAL MICROFLORAR37DE004224 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MACRINA, FRANCIS L · 1986 to 1995
–
NIDCR NIH HHS DE04224NIDCR NIH HHS DE07606
6 · The paper itself

Abstract

We have mapped a group of virulence genes of Porphyromonas gingivalis to a single large fragment of the genome. These genes (rgpA, kgp, and hagA) all contain a consensus repeat sequence (HArep). rgpA and kgp encode cysteine proteases with Arg-X and Lys-X specificity, respectively, and hagA encodes a hemagglutinin. Genomic DNA fragments separated by pulse-field gel electrophoresis were blotted and probed in order to localize the genes to a 0.25-Mb NheI fragment of the P. gingivalis W83 genome. Further hybridization analyses with single- and double-restriction digestion allowed us to generate a physical map of the fragment and determine the precise locations of the protease and hemagglutinin genes. In addition, we found an insertion-like sequence, IS195, near the ends of the 0. 25-Mb NheI fragment. A similarly sized fragment carrying HArep sequences was also demonstrated in the P. gingivalis W12 and W50 genomes.

Indexed as

Bacterial ProteinsGenes, BacterialBase SequenceChromosomes, BacterialConsensus SequenceCysteine EndopeptidasesDNA PrimersHemagglutininsHumansLectinsPhysical Chromosome MappingPorphyromonas gingivalisVirulenceBacterial ProteinsCysteine EndopeptidasesDNA Primershemagglutinin A, Porphyromonas gingivalisHemagglutininsLectins

Identifiers

PMID10225930
PMCPMC116013
OpenAlexW1917674106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.