Evidence map›Paper›PMID 10097110›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Probing the Saccharomyces cerevisiae centromeric DNA (CEN DNA)-binding factor 3 (CBF3) kinetochore complex by using atomic force microscopy.

L I Pietrasanta, D Thrower, W Hsieh, S Rao, O Stemmann, J Lechner, J Carbon, H Hansma

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Fork pausing allows centromere DNA loop formation and kinetochore assembly.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Studying protein-DNA interactions using atomic force microscopy.Seminars in cell & developmental biology · 2018
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Tripartite organization of centromeric chromatin in budding yeast.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Article
  18. Article
  19. The centromeric nucleosome of budding yeast is perfectly positioned and covers the entire centromere.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

L I PietrasantaDepartment of Physics, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93106, USA.
D Thrower
W Hsieh
S Rao
O Stemmann
J Lechner
J Carbon
H Hansma
University of Regensburg · DEUniversity of California, Santa Barbara · US

Funding

STUDIES ON GENE ORGANIZATION AND EXPRESSIONR01CA011034 · NCI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI CARBON, JOHN A · 1985 to 2007
$2.5M
NCI NIH HHS CA-11034NCI NIH HHS R01 CA011034
6 · The paper itself

Abstract

Yeast centromeric DNA (CEN DNA) binding factor 3 (CBF3) is a multisubunit protein complex that binds to the essential CDEIII element in CEN DNA. The four CBF3 proteins are required for accurate chromosome segregation and are considered to be core components of the yeast kinetochore. We have examined the structure of the CBF3-CEN DNA complex by atomic force microscopy. Assembly of CBF3-CEN DNA complexes was performed by combining purified CBF3 proteins with a DNA fragment that includes the CEN region from yeast chromosome III. Atomic force microscopy images showed DNA molecules with attached globular bodies. The contour length of the DNA containing the complex is approximately 9% shorter than the DNA alone, suggesting some winding of DNA within the complex. The measured location of the single binding site indicates that the complex is located asymmetrically to the right of CDEIII extending away from CDEI and CDEII, which is consistent with previous data. The CEN DNA is bent approximately 55 degrees at the site of complex formation. A significant fraction of the complexes are linked in pairs, showing three to four DNA arms, with molecular volumes approximately three times the mean volumes of two-armed complexes. These multi-armed complexes indicate that CBF3 can bind two DNA molecules together in vitro and, thus, may be involved in holding together chromatid pairs during mitosis.

Indexed as

Nuclear ProteinsSaccharomyces cerevisiae ProteinsCentromereChromosome MappingChromosomes, FungalDNA-Binding ProteinsDNA, FungalFungal ProteinsKinetochoresMicroscopy, Atomic ForceSaccharomyces cerevisiaeCEP3 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalFungal ProteinsNuclear ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID10097110
PMCPMC22367
OpenAlexW2066599043

What OpenQuestion holds

Texttitle and abstract
measurements read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.