Evidence map›Paper›PMID 10097077›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Rational design of a scytalone dehydratase-like enzyme using a structurally homologous protein scaffold.

A E Nixon, S M Firestine, F G Salinas, S J Benkovic

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Incorporation of a single His residue by rational design enables thiol-ester hydrolysis by human glutathione transferase A1-1.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  3. Enzyme-like proteins by computational design.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

A E Nixon152 Davey Laboratory, Department of Chemistry, Pennsylvania State University, University Park, PA 16802-6300, USA.
S M Firestine
F G Salinas
S J Benkovic
Pennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The generation of enzymes to catalyze specific reactions is one of the more challenging problems facing protein engineers. Structural similarities between the enzyme scytalone dehydratase with nuclear transport factor 2 (NTF2) suggested the potential for NTF2 to be re-engineered into a scytalone dehydratase-like enzyme. We introduced four key catalytic residues into NTF2 to create a scytalone dehydratase-like active site. A C-terminal helix found in scytalone dehydratase but absent in NTF2 also was added. Mutant NTF2 proteins were tested for catalytic activity by using a spectroscopic assay. One of the engineered enzymes exhibited catalytic activity with minimal kcat and Km values of 0.125 min-1 and 800 microM, respectively. This level of catalytic activity represents minimally a 150-fold improvement in activity over the background rate for substrate dehydration and a dramatic step forward from the catalytically inert parent NTF2. This work represents one of the few examples of converting a protein scaffold into an enzyme, outside those arising from the induction of catalytic activity into antibodies.

Indexed as

Nucleocytoplasmic Transport ProteinsAmino Acid SequenceCarrier ProteinsDrug DesignHydro-LyasesKineticsModels, MolecularNuclear ProteinsProtein EngineeringProtein Structure, SecondaryRecombinant ProteinsCarrier ProteinsHydro-LyasesNuclear ProteinsNucleocytoplasmic Transport ProteinsRecombinant Proteinsscytalone dehydratase

Identifiers

PMID10097077
PMCPMC22334
OpenAlexW2083347137

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.