Evidence map›Paper›PMID 10082565›Full record

ArticleMolecular and cellular biology1999

Binding of Gal4p and bicoid to nucleosomal sites in yeast in the absence of replication.

B Balasubramanian, R H Morse

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. A nucleosome positioned by alpha2/Mcm1 prevents Hap1 activator binding in vivo.Biochemical and biophysical research communications · 2007
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

B BalasubramanianMolecular Genetics Program, Wadsworth Center, New York State Department of Health, Albany, New York 12201-2002, USA.
R H Morse
New York State Department of Health · USPurchase College · US

Funding

BINDING OF TRANSCRIPTION FACTORS TO CHROMATIN IN YEASTR01GM051993 · NIGMS · WADSWORTH CENTER · PI MORSE, RANDALL H · 1995 to 2002
$804k
NIGMS NIH HHS GM51993NIGMS NIH HHS R01 GM051993
6 · The paper itself

Abstract

The yeast transcriptional activator Gal4p can bind to sites in nucleosomal DNA in vivo which it is unable to access in vitro. One event which could allow proteins to bind to otherwise inaccessible sites in chromatin in living cells is DNA replication. To determine whether replication is required for Gal4p to bind to nucleosomal sites in yeast, we have used previously characterized chromatin reporters in which Gal4p binding sites are incorporated into nucleosomes. We find that Gal4p is able to perturb nucleosome positioning via nucleosomal binding sites in yeast arrested either in G1, with alpha-factor, or in G2/M, with nocodazole. Similar results were obtained whether Gal4p synthesis was induced from the endogenous promoter by growth in galactose medium or by an artificial, hormone-inducible system. We also examined binding of the Drosophila transcriptional activator Bicoid, which belongs to the homeodomain class of transcription factors. We show that Bicoid, like Gal4p, can bind to nucleosomal sites in SWI+ and swi1Delta yeast and in the absence of replication. Our results indicate that some feature of the intracellular environment other than DNA replication or the SWI-SNF complex permits factor access to nucleosomal sites.

Indexed as

Saccharomyces cerevisiae ProteinsAntineoplastic AgentsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA ReplicationDrosophila ProteinsFungal ProteinsG1 PhaseG2 PhaseGenes, FungalHomeodomain ProteinsMating FactorMitosisModels, GeneticNocodazoleNucleosomesAntineoplastic Agentsbcd protein, DrosophilaChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDrosophila ProteinsFungal ProteinsGAL4 protein, S cerevisiaeHomeodomain ProteinsMating FactorNocodazoleNucleosomesPeptidesSaccharomyces cerevisiae ProteinsSWI1 protein, S cerevisiaeTrans-ActivatorsTranscription Factors

Identifiers

PMID10082565
PMCPMC84092
OpenAlexW1807079294

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.