Evidence map›Paper›PMID 10082564›Full record

ArticleMolecular and cellular biology1999

An activator binding module of yeast RNA polymerase II holoenzyme.

Y C Lee, J M Park, S Min, S J Han, Y J Kim

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 161 citations in OpenAlex.

  1. Article
  2. Med3-mediated NADPH generation to helpApplied and environmental microbiology · 2024
    Article
  3. Article
  4. Article
  5. Twenty years of Mediator complex structural studies.Biochemical Society transactions · 2019
    Review
  6. Review
  7. Article
  8. Transcriptome Analysis of FourG3 (Bethesda, Md.) · 2018
    Article
  9. Article
  10. Article
  11. Mediator Tail Module Is Required for Tac1-ActivatedAntimicrobial agents and chemotherapy · 2017
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Mechanisms of Mediator complex action in transcriptional activation.Cellular and molecular life sciences : CMLS · 2013
    Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Y C LeeCenter for Molecular Medicine, Samsung Biomedical Research Institute, Sungkyunkwan University College of Medicine, Kangnam-ku, Seoul 135-230, Korea.
J M Park
S Min
S J Han
Y J Kim
Samsung (South Korea) · KRSungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mediator complex of Saccharomyces cerevisiae is required for both general and regulated transcription of RNA polymerase II (PolII) and is composed of two stable subcomplexes (Srb4 and Rgr1 subcomplexes). To decipher the function of each Mediator subcomplex and to delineate the functional relationship between the subcomplexes, we characterized the compositions and biochemical activities of PolII-Mediator complexes (holoenzymes) prepared from several Mediator mutant strains of S. cerevisiae. We found that holoenzymes devoid of a functional Gal11 module were defective for activated but not basal transcription in a reconstituted in vitro system. This activation-specific defect was correlated with a crippled physical interaction to transcriptional activator proteins, which could be bypassed by artificial recruitment of a mutant holoenzyme to a promoter. Consistent with this observation, a direct interaction between Gal11 and gene-specific transcriptional activator proteins was detected by far-Western analyses and column binding assays. In contrast, the srb5 deletion mutant holoenzyme was defective for both basal and activated transcription, despite its capacity for activator binding that is comparable to that of the wild-type holoenzyme. These results demonstrate that the Gal11 module of the Rgr1 subcomplex is required for the efficient recruitment of PolII holoenzyme to a promoter via activator-specific interactions, while the Srb4 subcomplex functions in the modulation of general polymerase activity.

Indexed as

Saccharomyces cerevisiae ProteinsTATA-Binding Protein Associated FactorsTranscriptional ActivationTranscription Factors, TFIITranscription Factor TFIIDDNA-Binding ProteinsFungal ProteinsHoloenzymesMediator ComplexMutationPeptide FragmentsPhosphorylationProtein BindingRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiaeDNA-Binding ProteinsFungal ProteinsGAL11 protein, S cerevisiaeHoloenzymesMediator ComplexPeptide FragmentsRepressor ProteinsRGR1 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae ProteinsSRB4 protein, S cerevisiaeTAF6 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTATA-Box Binding ProteinTrans-ActivatorsTranscription FactorsTranscription Factors, TFIITranscription Factor TFIIDTranscription Factor TFIIH

Identifiers

PMID10082564
PMCPMC84091
OpenAlexW1808467244

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.