Evidence map›Paper›PMID 10082560›Full record

ArticleMolecular and cellular biology1999

Overlapping specificities of base excision repair, nucleotide excision repair, recombination, and translesion synthesis pathways for DNA base damage in Saccharomyces cerevisiae.

R L Swanson, N J Morey, P W Doetsch, S Jinks-Robertson

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 207 citations in OpenAlex.

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  20. Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

R L SwansonDepartments of Biochemistry, Department of Radiation Oncology, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
N J Morey
P W Doetsch
S Jinks-Robertson
Emory University · USInstitut thématique Génétique, génomique et bioinformatique · FRNutrition Sciences (Belgium) · BE

Funding

Training Program in Biochemistry, Cell and Molecular BiologyT32GM008367 · NIGMS · EMORY UNIVERSITY · PI BOISE, LAWRENCE H., CORBETT, ANITA H. · 1990 to 2019
$5.6M
REGULATION OF MITOTIC RECOMBINATION IN YEASTR01GM038464 · NIGMS · EMORY UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1992 to 2015
$3.6M
REVERSAL OF DNA DAMAGE BY ALTERNATIVE EXCISION REPAIRR01CA073041 · NCI · EMORY UNIVERSITY · PI DOETSCH, PAUL W. · 1997 to 2005
$2.2M
TRANSCRIPTIONAL MUTAGENESIS BY IONIZING RADIATIONR01CA078622 · NCI · EMORY UNIVERSITY · PI DOETSCH, PAUL W. · 1998 to 2002
$848k
RECOMBINATION BETWEEN REPEATED SEQUENCE IN YEASTR29GM038464 · NIGMS · EMORY UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1987 to 1991
–
NCI NIH HHS CA73041NCI NIH HHS CA78622NCI NIH HHS R01 CA073041NIGMS NIH HHS GM38464NIGMS NIH HHS R01 GM038464NIGMS NIH HHS T32 GM008367
6 · The paper itself

Abstract

The removal of oxidative damage from Saccharomyces cerevisiae DNA is thought to be conducted primarily through the base excision repair pathway. The Escherichia coli endonuclease III homologs Ntg1p and Ntg2p are S. cerevisiae N-glycosylase-associated apurinic/apyrimidinic (AP) lyases that recognize a wide variety of damaged pyrimidines (H. J. You, R. L. Swanson, and P. W. Doetsch, Biochemistry 37:6033-6040, 1998). The biological relevance of the N-glycosylase-associated AP lyase activity in the repair of abasic sites is not well understood, and the majority of AP sites in vivo are thought to be processed by Apn1p, the major AP endonuclease in yeast. We have found that yeast cells simultaneously lacking Ntg1p, Ntg2p, and Apn1p are hyperrecombinogenic (hyper-rec) and exhibit a mutator phenotype but are not sensitive to the oxidizing agents H2O2 and menadione. The additional disruption of the RAD52 gene in the ntg1 ntg2 apn1 triple mutant confers a high degree of sensitivity to these agents. The hyper-rec and mutator phenotypes of the ntg1 ntg2 apn1 triple mutant are further enhanced by the elimination of the nucleotide excision repair pathway. In addition, removal of either the lesion bypass (Rev3p-dependent) or recombination (Rad52p-dependent) pathway specifically enhances the hyper-rec or mutator phenotype, respectively. These data suggest that multiple pathways with overlapping specificities are involved in the removal of, or tolerance to, spontaneous DNA damage in S. cerevisiae. In addition, the fact that these responses to induced and spontaneous damage depend upon the simultaneous loss of Ntg1p, Ntg2p, and Apn1p suggests a physiological role for the AP lyase activity of Ntg1p and Ntg2p in vivo.

Indexed as

DNA DamageDNA-Directed DNA PolymeraseDNA RepairRecombination, GeneticSaccharomyces cerevisiae ProteinsDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsDNA Repair EnzymesEndodeoxyribonucleasesEndonucleasesFungal ProteinsHydrogen PeroxideModels, GeneticMutagenesisN-Glycosyl HydrolasesOxidantsApn1 protein, S cerevisiaeDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Repair EnzymesEndodeoxyribonucleasesEndonucleasesFungal ProteinsHydrogen PeroxideN-Glycosyl HydrolasesNTG1 protein, S cerevisiaeNTG2 protein, S cerevisiaeOxidantsRAD1 protein, S cerevisiaeRad52 DNA Repair and Recombination ProteinRAD52 protein, S cerevisiaeREV3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVitamin K

Identifiers

PMID10082560
PMCPMC84087
OpenAlexW2101915081

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.