Evidence map›Paper›PMID 10077626›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Position-dependent inhibition of class-switch recombination by PGK-neor cassettes inserted into the immunoglobulin heavy chain constant region locus.

K J Seidl, J P Manis, A Bottaro, J Zhang, L Davidson, A Kisselgof, H Oettgen, F W Alt

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Physiological role of the 3'IgH CBEs super-anchor in antibody class switching.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Two modes ofProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Article
  10. Dwarfism in homozygous Agc1Genesis (New York, N.Y. : 2000) · 2017
    Article
  11. Inducible CTCF insulator delays theProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Review
  13. Polyclonal hyper-IgE mouse model reveals mechanistic insights into antibody class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Article
  15. Article
  16. Article
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  19. Article
  20. Downstream class switching leads to IgE antibody production by B lymphocytes lacking IgM switch regions.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

K J SeidlHoward Hughes Medical Institute, Boston, MA 02115, USA.
J P Manis
A Bottaro
J Zhang
L Davidson
A Kisselgof
H Oettgen
F W Alt
Howard Hughes Medical Institute · USHarvard University · US

Funding

CONTROL IG HEAVY CHAIN CLASS SWITCHINGK11AI001285 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI MANIS, JOHN P · 1994 to 1999
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GORDON CONFERENCE ON STAPHYLOCOCCAL DISEASER13AI031531 · NIAID · GORDON RESEARCH CONFERENCES · PI STEWART, GEORGE C. · 1991 to 1991
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NIAID NIH HHS AI-01285NIAID NIH HHS AI-240047NIAID NIH HHS AI-31531
6 · The paper itself

Abstract

The Ig heavy chain (IgH) constant region (CH) genes are organized from 5' to 3' in the order Cmicro, Cdelta, Cgamma3, Cgamma1, Cgamma2b, Cgamma2a, Cepsilon, and Calpha. Expression of CH genes downstream of Cdelta involves class-switch recombination (CSR), a process that is targeted by germ-line transcription (GT) of the corresponding CH gene. Previously, we demonstrated that insertion of a PGK-neor cassette at two sites downstream of Calpha inhibits, in cultured B cells, GT of and CSR to a subset of CH genes (including Cgamma3, Cgamma2a, Cgamma2b, and Cepsilon) that lie as far as 120 kb upstream. Here we show that insertion of the PGK-neor cassette in place of sequences in the Igamma2b locus inhibits GT of and CSR to the upstream Cgamma3 gene, but has no major effect on the downstream Cgamma2a and Cepsilon genes. Moreover, replacement of the Cepsilon exons with a PGK-neor cassette in the opposite transcriptional orientation also inhibits, in culture, GT of and CSR to the upstream Cgamma3, Cgamma2b, and Cgamma2a genes. As with the PGK-neor insertions 3' of Calpha studied previously, the Cgamma1 and Calpha genes were less affected by these mutations both in culture and in mice, whereas the Cgamma2b gene appeared less affected in vivo. Our findings support the existence of a long-range 3' IgH regulatory region required for GT of and CSR to multiple CH genes and suggest that PGK-neor cassette insertion into the locus short circuits the ability of this region to facilitate GT of dependent CH genes upstream of the insertion.

Indexed as

Genes, ImmunoglobulinImmunoglobulin Class SwitchingAnimalsImmunoglobulin Heavy ChainsLocus Control RegionMiceMutagenesis, InsertionalNeomycinPhosphoglycerate KinaseImmunoglobulin Heavy ChainsNeomycinPhosphoglycerate Kinase

Identifiers

PMID10077626
PMCPMC15884
OpenAlexW2124541302

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.