Evidence map›Paper›PMID 10077585›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

An activation-specific role for transcription factor TFIIB in vivo.

W H Wu, M Hampsey

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

W H WuDepartment of Biochemistry, Division of Nucleic Acids Enzymology, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, 675 Hoes Lane, Piscataway, NJ 08854-5635, USA.
M Hampsey
Johnson University · US

Funding

GENETIC ANALYSIS OF TRANSCRIPTION INITIATION IN YEASTR01GM039484 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAMPSEY, MICHAEL · 1995 to 2012
$2.7M
GENETIC ANALYSIS OF TRANSLATION INITIATION IN YEASTR29GM039484 · NIGMS · LOUISIANA STATE UNIV HSC SHREVEPORT · PI HAMPSEY, MICHAEL · 1988 to 1993
–
NIGMS NIH HHS GM39484NIGMS NIH HHS R01 GM039484
6 · The paper itself

Abstract

A yeast mutant was isolated encoding a single amino acid substitution [serine-53 --> proline (S53P)] in transcription factor TFIIB that impairs activation of the PHO5 gene in response to phosphate starvation. This effect is activation-specific because S53P did not affect the uninduced level of PHO5 expression, yet is not specific to PHO5 because Adr1-mediated activation of the ADH2 gene also was impaired by S53P. Pho4, the principal activator of PHO5, directly interacted with TFIIB in vitro, and this interaction was impaired by the S53P replacement. Furthermore, Pho4 induced a conformational change in TFIIB, detected by enhanced sensitivity to V8 protease. The S53P replacement also impaired activation of a lexA(op)-lacZ reporter by a LexA fusion protein to the activation domain of Adr1, thereby indicating that the transcriptional effect on ADH2 expression is specific to the activation function of Adr1. These results define an activation-specific role for TFIIB in vivo and suggest that certain activators induce a conformational change in TFIIB as part of their mechanism of transcriptional stimulation.

Indexed as

DNA-Binding ProteinsGene Expression Regulation, FungalSaccharomyces cerevisiae ProteinsAcid PhosphataseFungal ProteinsGenes, FungalSaccharomyces cerevisiaeTranscription FactorsTranscription Factor TFIIBTranscription, GeneticAcid PhosphataseDNA-Binding ProteinsFungal ProteinsPHO4 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranscription Factor TFIIB

Identifiers

PMID10077585
PMCPMC15843
OpenAlexW1977894101

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.