Evidence map›Paper›PMID 10074068›Full record

ArticleJournal of bacteriology1999

Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product.

G Plunkett, D J Rose, T J Durfee, F R Blattner

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
29.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 362 citations in OpenAlex.

  1. Article
  2. NovelInternational journal of molecular sciences · 2025
    Article
  3. Article
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  5. Shiga toxin-producingMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  6. Article
  7. Article
  8. Diversity of Shiga toxin transducing phages inFrontiers in microbiology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The Prophage and Us-Shiga Toxin Phages Revisited.Pathogens (Basel, Switzerland) · 2023
    Article
  14. Article
  15. Article
  16. Hybrid Vigor: Importance of Hybrid λ Phages in Early Insights in Molecular Biology.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Viruses in astrobiology.Frontiers in microbiology · 2022
    Review

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

G PlunkettLaboratory of Genetics, University of Wisconsin, Madison, Wisconsin 53706, USA.
D J Rose
T J Durfee
F R Blattner
University of Wisconsin–Madison · US

Funding

E COLI 0157--H7 BY SAMPLE SEQUENCINGR01AI041329 · NIAID · UNIVERSITY OF WISCONSIN MADISON · PI BLATTNER, FREDERICK R · 1996 to 1998
–
NIAID NIH HHS AI41329-01
6 · The paper itself

Abstract

Lysogenic bacteriophages are major vehicles for the transfer of genetic information between bacteria, including pathogenicity and/or virulence determinants. In the enteric pathogen Escherichia coli O157:H7, which causes hemorrhagic colitis and hemolytic-uremic syndrome, Shiga toxins 1 and 2 (Stx1 and Stx2) are phage encoded. The sequence and analysis of the Stx2 phage 933W is presented here. We find evidence that the toxin genes are part of a late-phage transcript, suggesting that toxin production may be coupled with, if not dependent upon, phage release during lytic growth. Another phage gene, stk, encodes a product resembling eukaryotic serine/threonine protein kinases. Based on its position in the sequence, Stk may be produced by the prophage in the lysogenic state, and, like the YpkA protein of Yersinia species, it may interfere with the signal transduction pathway of the mammalian host. Three novel tRNA genes present in the phage genome may serve to increase the availability of rare tRNA species associated with efficient expression of pathogenicity determinants: both the Shiga toxin and serine/threonine kinase genes contain rare isoleucine and arginine codons. 933W also has homology to lom, encoding a member of a family of outer membrane proteins associated with virulence by conferring the ability to survive in macrophages, and bor, implicated in serum resistance.

Indexed as

Attachment Sites, MicrobiologicalBacterial ToxinsBase SequenceColiphagesDNA, ViralEscherichia coli O157Genes, BacterialGenes, ViralHumansMicroscopy, ElectronMolecular Sequence DataNucleic Acid ConformationOpen Reading FramesOperator Regions, GeneticPromoter Regions, GeneticRNA, TransferBacterial ToxinsDNA, ViralRNA, TransferRNA, ViralShiga Toxins

Identifiers

PMID10074068
PMCPMC93574
OpenAlexW2170846767

What OpenQuestion holds

Texttitle and abstract
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.