Evidence map›Paper›PMID 10049856›Full record

ArticleApplied and environmental microbiology1999

High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph.

P F Dunfield, W Liesack, T Henckel, R Knowles, R Conrad

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Frontiers in microbiology · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Molecular ecology techniques for the study of aerobic methanotrophs.Applied and environmental microbiology · 2008
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

P F DunfieldMax-Planck-Institut für terrestrische Mikrobiologie, 35043 Marburg, Germany.
W Liesack
T Henckel
R Knowles
R Conrad

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methanotrophic bacteria in an organic soil were enriched on gaseous mixing ratios of <275 parts per million of volume (ppmv) of methane (CH4). After 4 years of growth and periodic dilution (>10(20) times the initial soil inoculum), a mixed culture was obtained which displayed an apparent half-saturation constant [Km(app)] for CH4 of 56 to 186 nM (40 to 132 ppmv). This value was the same as that measured in the soil itself and about 1 order of magnitude lower than reported values for pure cultures of methane oxidizers. However, the Km(app) increased when the culture was transferred to higher mixing ratios of CH4 (1,000 ppmv, or 1%). Denaturing gradient gel electrophoresis of the enrichment grown on <275 ppmv of CH4 revealed a single gene product of pmoA, which codes for a subunit of particulate methane monooxygenase. This suggested that only one methanotroph species was present. This organism was isolated from a sample of the enrichment culture grown on 1% CH4 and phylogenetically positioned based on its 16S rRNA, pmoA, and mxaF gene sequences as a type II strain of the Methylocystis/Methylosinus group. A coculture of this strain with a Variovorax sp., when grown on <275 ppmv of CH4, had a Km(app) (129 to 188 nM) similar to that of the initial enrichment culture. The data suggest that the affinity of methanotrophic bacteria for CH4 varies with growth conditions and that the oxidation of atmospheric CH4 observed in this soil is carried out by type II methanotrophic bacteria which are similar to characterized species.

Indexed as

Soil MicrobiologyCulture MediaDNA, BacterialElectrophoresis, Polyacrylamide GelGenes, rRNAKineticsMethaneMethylococcaceaeMolecular Sequence DataOxidation-ReductionOxygenasesPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SCulture MediaDNA, BacterialMethanemethane monooxygenaseOxygenasesRNA, Ribosomal, 16S

Identifiers

PMID10049856
PMCPMC91137

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.